Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMB_RS08640 Genome accession   NC_003112
Coordinates   1724748..1725212 (-) Length   154 a.a.
NCBI ID   WP_162467382.1    Uniprot ID   -
Organism   Neisseria meningitidis MC58     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1719748..1730212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB_RS08615 (NMB1653) - 1721032..1721304 (-) 273 WP_002218494.1 ACT domain-containing protein -
  NMB_RS08620 (NMB1654) - 1721430..1722167 (-) 738 WP_002223538.1 toxin-antitoxin system YwqK family antitoxin -
  NMB_RS08625 (NMB1655) prmB 1722448..1723347 (-) 900 WP_002232685.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  NMB_RS08630 (NMB1656) - 1723492..1724085 (+) 594 WP_002218492.1 hypothetical protein -
  NMB_RS11780 - 1724197..1724634 (+) 438 Protein_1676 HK97 family phage prohead protease -
  NMB_RS08640 (NMB1657) comE 1724748..1725212 (-) 465 WP_162467382.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16587.88 Da        Isoelectric Point: 10.8645

>NTDB_id=21609 NMB_RS08640 WP_162467382.1 1724748..1725212(-) (comE) [Neisseria meningitidis MC58]
MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=21609 NMB_RS08640 WP_162467382.1 1724748..1725212(-) (comE) [Neisseria meningitidis MC58]
TTGCTTTGCCCGGAAAAAATGTCGGTGATGGCGGGACGGCATCCGTACGGTGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGACCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment