Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BXU06_RS04890 Genome accession   NZ_CP019509
Coordinates   1117765..1118559 (-) Length   264 a.a.
NCBI ID   WP_077297369.1    Uniprot ID   A0A1U9JK51
Organism   Aquaspirillum sp. LM1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1112765..1123559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BXU06_RS04885 (BXU06_04910) - 1115972..1117588 (+) 1617 WP_077297367.1 methyl-accepting chemotaxis protein -
  BXU06_RS04890 (BXU06_04915) comL 1117765..1118559 (-) 795 WP_077297369.1 outer membrane protein assembly factor BamD Machinery gene
  BXU06_RS04895 (BXU06_04920) rluD 1118558..1119622 (+) 1065 WP_077297371.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BXU06_RS04905 (BXU06_04930) - 1120070..1121518 (+) 1449 WP_077297373.1 sigma-54 dependent transcriptional regulator -
  BXU06_RS04910 (BXU06_04935) - 1121548..1122180 (-) 633 WP_171982113.1 hypothetical protein -
  BXU06_RS04915 (BXU06_04940) - 1122146..1122754 (-) 609 WP_077297377.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30485.78 Da        Isoelectric Point: 8.3502

>NTDB_id=216070 BXU06_RS04890 WP_077297369.1 1117765..1118559(-) (comL) [Aquaspirillum sp. LM1]
MKKIVAAMLMAAGLVACSSTKGPADETRGWPVERLYGEARDELNSGNYTRAVQLYETLEARFPYGRFAQQAQMDLAYTHF
KDREAQLALAACDRFIKLHPAHPNLDYIYYLKGLVHFNEDESLLTRWTGQDLSERDPRAARESFQAFRELITRFPQSPYA
EDGKKKMAILVDAMAANEMHVARYYMKRKAYLAAVNRAQATIREFADAGYTEEALALMVTAYTELKLPKLAEDSQRVLVT
SYPNSRYLKSPWVYQDMPWYQFWR

Nucleotide


Download         Length: 795 bp        

>NTDB_id=216070 BXU06_RS04890 WP_077297369.1 1117765..1118559(-) (comL) [Aquaspirillum sp. LM1]
ATGAAAAAAATCGTTGCTGCAATGCTGATGGCGGCAGGTCTGGTGGCATGTTCGTCCACCAAGGGACCTGCTGATGAAAC
GCGAGGCTGGCCGGTAGAAAGACTCTACGGCGAGGCCCGCGACGAATTGAACAGTGGCAATTATACGCGCGCTGTGCAGC
TATACGAAACGCTGGAAGCGCGTTTTCCGTACGGACGCTTTGCGCAGCAAGCGCAAATGGACCTCGCGTACACCCATTTC
AAGGATAGGGAAGCCCAACTGGCGCTGGCGGCGTGCGACCGTTTCATCAAACTGCACCCGGCCCACCCCAACCTGGATTA
CATCTACTACCTGAAGGGCCTGGTGCATTTCAACGAAGATGAATCGCTGCTGACCCGCTGGACCGGGCAGGATTTGTCCG
AACGCGATCCGCGCGCCGCGCGCGAGTCGTTCCAGGCGTTTCGCGAGCTGATTACCCGCTTCCCGCAAAGCCCGTATGCG
GAAGACGGCAAGAAAAAAATGGCCATCCTGGTGGACGCCATGGCCGCCAATGAAATGCACGTGGCGCGCTATTACATGAA
ACGCAAGGCGTACCTGGCGGCGGTCAACCGCGCCCAGGCCACCATTCGCGAGTTTGCCGACGCGGGTTACACCGAAGAAG
CCTTGGCGCTGATGGTCACCGCCTACACCGAGCTGAAACTGCCGAAACTGGCCGAAGACAGCCAGCGGGTGCTGGTCACG
AGCTACCCGAACAGCCGCTATCTGAAATCGCCCTGGGTGTATCAGGATATGCCGTGGTATCAGTTCTGGCGTTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(33-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1U9JK51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

55.056

100

0.557
  comL Neisseria gonorrhoeae MS11

53.558

100

0.542

Multiple sequence alignment