Detailed information NTG0216027

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BZG34_RS09965
• Genome accession: NZ_CP019467
• Coordinates: 1697595..1698455 (+)
• Length: 286 a.a.
• NCBI ID: WP_003689814.1
• Uniprot ID: A0AA44U9R8
• Organism: Neisseria gonorrhoeae strain RIVM0640
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1692595..1703455

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BZG34_RS09945 (BZG34_09940)	dapD	1693105..1693926 (-)	822	WP_003689804.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-
BZG34_RS09950 (BZG34_09945)	pgi	1694136..1695779 (-)	1644	WP_003689806.1	glucose-6-phosphate isomerase	-
BZG34_RS09960 (BZG34_09955)	pilG	1696289..1697521 (+)	1233	WP_003689811.1	type 4 pilus assembly protein PilG	Machinery gene
BZG34_RS09965 (BZG34_09960)	pilD	1697595..1698455 (+)	861	WP_003689814.1	A24 family peptidase	Machinery gene
BZG34_RS09970 (BZG34_09965)	coaE	1698452..1699084 (+)	633	WP_003689816.1	dephospho-CoA kinase	-
BZG34_RS09975 (BZG34_09970)	-	1699077..1699286 (+)	210	WP_003696096.1	DNA gyrase inhibitor YacG	-
BZG34_RS09980 (BZG34_09975)	pilF	1699372..1701048 (-)	1677	WP_003689817.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BZG34_RS09995 (BZG34_09985)	-	1701386..1701832 (-)	447	WP_003689818.1	DUF441 domain-containing protein	-
BZG34_RS10000 (BZG34_09990)	-	1701836..1702810 (-)	975	WP_003689819.1	polyprenyl synthetase family protein	-
BZG34_RS10010 (BZG34_10000)	rplU	1703034..1703342 (+)	309	WP_003691838.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31332.34 Da
• Isoelectric Point: 8.9561

>NTDB_id=216027 BZG34_RS09965 WP_003689814.1 1697595..1698455(+) (pilD) [Neisseria gonorrhoeae strain RIVM0640]
MSDLSVLSPFAVPLAAVLGLLVGSFLNVVIYRVPVMMERGWTVFAKEHLNLPLTDDESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYSSLWLLCAVYKLLTGKTGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGRHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVR

Nucleotide

• Length: 861 bp

>NTDB_id=216027 BZG34_RS09965 WP_003689814.1 1697595..1698455(+) (pilD) [Neisseria gonorrhoeae strain RIVM0640]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCAGTTTTGGGGCTGCTGGTCGGCAGCTTCCTGAA
TGTCGTCATTTACCGCGTACCCGTTATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAACATTTAAACCTGCCGCTGA
CCGACGATGAAAGCCGTACCTTCAACCTGATGAAGCCGGATTCCTGCTGTCCCAAATGCCGTGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGTTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTCGCCTGGCAATACGGCTGGTCTTGGATTACGCTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC
TTGATCTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATAGTTCATTATGGCTCTTATGTGCAGTGTATAAACTGCTCACAGGAAAAACCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCTCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCGGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	100	100	1
pilD	Vibrio cholerae strain A1552	44.792	100	0.451
pilD	Vibrio campbellii strain DS40M4	45.652	96.503	0.441
pilD	Acinetobacter baumannii D1279779	47.727	92.308	0.441
pilD	Acinetobacter nosocomialis M2	47.727	92.308	0.441