Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | BZG34_RS01315 | Genome accession | NZ_CP019467 |
| Coordinates | 221540..221935 (+) | Length | 131 a.a. |
| NCBI ID | WP_003703428.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain RIVM0640 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 214743..226425 | 221540..221935 | within | 0 |
Gene organization within MGE regions
Location: 214743..226425
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BZG34_RS01265 (BZG34_01230) | - | 214743..215087 (+) | 345 | WP_003691787.1 | HAD hydrolase family protein | - |
| BZG34_RS01270 (BZG34_01235) | - | 215041..215694 (+) | 654 | Protein_205 | TIGR01621 family pseudouridine synthase | - |
| BZG34_RS14105 (BZG34_01270) | - | 221319..221438 (+) | 120 | Protein_206 | competence protein ComE | - |
| BZG34_RS01315 (BZG34_01275) | comE | 221540..221935 (+) | 396 | WP_003703428.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| BZG34_RS01320 (BZG34_01280) | comP | 222023..222472 (+) | 450 | WP_002214937.1 | type IV pilin protein | Machinery gene |
| BZG34_RS01330 (BZG34_01290) | - | 222849..222995 (-) | 147 | WP_003691757.1 | hypothetical protein | - |
| BZG34_RS01335 (BZG34_01295) | - | 223382..223972 (+) | 591 | WP_080229150.1 | DNA cytosine methyltransferase | - |
| BZG34_RS01340 (BZG34_01300) | - | 223969..224340 (+) | 372 | WP_012503918.1 | DNA cytosine methyltransferase | - |
| BZG34_RS14110 (BZG34_01305) | - | 224354..225211 (+) | 858 | WP_012503917.1 | ATP-binding protein | - |
| BZG34_RS14115 (BZG34_01310) | - | 225401..225997 (+) | 597 | WP_012503916.1 | TIGR02391 family protein | - |
| BZG34_RS01350 (BZG34_01315) | - | 226003..226425 (+) | 423 | WP_003691751.1 | very short patch repair endonuclease | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 13796.61 Da Isoelectric Point: 10.8790
>NTDB_id=215998 BZG34_RS01315 WP_003703428.1 221540..221935(+) (comE) [Neisseria gonorrhoeae strain RIVM0640]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK
Nucleotide
Download Length: 396 bp
>NTDB_id=215998 BZG34_RS01315 WP_003703428.1 221540..221935(+) (comE) [Neisseria gonorrhoeae strain RIVM0640]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Neisseria gonorrhoeae MS11 |
100 |
100 |
1 |
| comE | Neisseria gonorrhoeae MS11 |
100 |
100 |
1 |
| comE | Neisseria gonorrhoeae MS11 |
100 |
100 |
1 |
| comE | Neisseria gonorrhoeae MS11 |
100 |
100 |
1 |