Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | BZG33_RS01320 | Genome accession | NZ_CP019466 |
| Coordinates | 221536..221931 (+) | Length | 131 a.a. |
| NCBI ID | WP_003703428.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain RIVM0610 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 214739..226421 | 221536..221931 | within | 0 |
Gene organization within MGE regions
Location: 214739..226421
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BZG33_RS01270 (BZG33_01230) | - | 214739..215083 (+) | 345 | WP_003691787.1 | HAD hydrolase family protein | - |
| BZG33_RS01275 (BZG33_01235) | - | 215037..215690 (+) | 654 | Protein_205 | TIGR01621 family pseudouridine synthase | - |
| BZG33_RS14035 (BZG33_01270) | - | 221315..221434 (+) | 120 | Protein_206 | competence protein ComE | - |
| BZG33_RS01320 (BZG33_01275) | comE | 221536..221931 (+) | 396 | WP_003703428.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| BZG33_RS01325 (BZG33_01280) | comP | 222019..222468 (+) | 450 | WP_002214937.1 | type IV pilin protein | Machinery gene |
| BZG33_RS01335 (BZG33_01290) | - | 222845..222991 (-) | 147 | WP_003691757.1 | hypothetical protein | - |
| BZG33_RS01340 (BZG33_01295) | - | 223378..223968 (+) | 591 | WP_080229150.1 | DNA cytosine methyltransferase | - |
| BZG33_RS01345 (BZG33_01300) | - | 223965..224336 (+) | 372 | WP_012503918.1 | DNA cytosine methyltransferase | - |
| BZG33_RS14040 (BZG33_01305) | - | 224350..225207 (+) | 858 | WP_012503917.1 | ATP-binding protein | - |
| BZG33_RS14045 (BZG33_01310) | - | 225397..225993 (+) | 597 | WP_012503916.1 | TIGR02391 family protein | - |
| BZG33_RS01355 (BZG33_01315) | - | 225999..226421 (+) | 423 | WP_003691751.1 | very short patch repair endonuclease | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 13796.61 Da Isoelectric Point: 10.8790
>NTDB_id=215951 BZG33_RS01320 WP_003703428.1 221536..221931(+) (comE) [Neisseria gonorrhoeae strain RIVM0610]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK
Nucleotide
Download Length: 396 bp
>NTDB_id=215951 BZG33_RS01320 WP_003703428.1 221536..221931(+) (comE) [Neisseria gonorrhoeae strain RIVM0610]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Neisseria gonorrhoeae MS11 |
100 |
100 |
1 |
| comE | Neisseria gonorrhoeae MS11 |
100 |
100 |
1 |
| comE | Neisseria gonorrhoeae MS11 |
100 |
100 |
1 |
| comE | Neisseria gonorrhoeae MS11 |
100 |
100 |
1 |