Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NMB_RS04060 Genome accession   NC_003112
Coordinates   808020..809399 (+) Length   459 a.a.
NCBI ID   WP_002235637.1    Uniprot ID   Q9K040
Organism   Neisseria meningitidis MC58     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 803020..814399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB_RS04035 (NMB0778) - 803589..804923 (+) 1335 WP_002225426.1 uroporphyrinogen-III C-methyltransferase -
  NMB_RS04040 (NMB0779) - 804920..806143 (+) 1224 WP_002225425.1 heme biosynthesis protein HemY -
  NMB_RS04045 (NMB0780) - 806176..806616 (+) 441 WP_002222725.1 hypothetical protein -
  NMB_RS04050 (NMB0781) hemE 806770..807834 (+) 1065 WP_002222724.1 uroporphyrinogen decarboxylase -
  NMB_RS04055 - 807822..807992 (-) 171 WP_153308406.1 hypothetical protein -
  NMB_RS04060 (NMB0782) radA 808020..809399 (+) 1380 WP_002235637.1 DNA repair protein RadA Machinery gene
  NMB_RS04065 (NMB0783) - 809675..810154 (-) 480 WP_002222722.1 DUF302 domain-containing protein -
  NMB_RS04070 (NMB0784) - 810396..810755 (-) 360 WP_002219522.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49533.03 Da        Isoelectric Point: 7.3292

>NTDB_id=21595 NMB_RS04060 WP_002235637.1 808020..809399(+) (radA) [Neisseria meningitidis MC58]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTDGVNLLAEIRMEAIQAA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDICRDSRE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=21595 NMB_RS04060 WP_002235637.1 808020..809399(+) (radA) [Neisseria meningitidis MC58]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACTTCGCCGAAATGGCAGGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCCTTGCCGCGCCCGAGCCGAAAAACGCCCGTTTCCAATCTTGGGCGGCGG
ATACCTCGACCGTCCAATCCCTCTCCGCCGTTACCGCCACCGAAGTGCCGCGCAATCCGACCGGTATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGTGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGTAAAGTGCTATACGTTTCCGGCGAAGAATCCGCCCAACAAGTCGCCC
TGCGCGCGCAGCGTTTGGAACTGCCGACCGACGGCGTAAACCTTCTTGCCGAAATCCGCATGGAAGCGATTCAGGCGGCC
TTGAAACAGCATCAGCCCGAAGTTGTCGTCATCGACTCTATCCAAACCATGTATTCCGACCAAATCACGTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGCGAGTGTGCCGCCCAACTGACGCGCATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAACACATGGTTGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGCGCGGCAAACGAACTGGGCGTGTTCGCGAT
GACGGAAAACGGTTTGAAAGGTGTGTCCAACCCGTCCGCCATCTTCCTCGCCAGCTACCGCGACGATACGCCCGGCTCGT
GCGTTTTGGTTACACAGGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCGCACGGCTTCACG
CCCAAACGCCTCACCGTCGGACTGGAACAAAACCGTCTTGCGATGCTGCTTGCCGTGTTAAACCGCCACGGCGGCATCGC
CTGTTTCGATCAGGATGTGTTCCTCAACGCCGTCGGCGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCGGTCATCC
TCGCGATGCTTTCCAGCTTCCGCAACCGCCCTATGCCTGAAAAAACCGTGGTTTTCGGCGAAATCGGCTTAAGCGGCGAA
GTCCGCCCCGTCGCACGCGGGCAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTCCCCAAAGC
CAATATGCCGCGCAACGCCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATCGATATTT
GCCGCGACAGCAGGGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(80-220)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9K040

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.33

99.129

0.499
  radA Streptococcus pneumoniae Rx1

47.566

98.475

0.468
  radA Streptococcus pneumoniae D39

47.566

98.475

0.468
  radA Streptococcus pneumoniae R6

47.566

98.475

0.468
  radA Streptococcus pneumoniae TIGR4

47.566

98.475

0.468
  radA Streptococcus mitis SK321

47.45

98.257

0.466
  radA Streptococcus mitis NCTC 12261

47.45

98.257

0.466

Multiple sequence alignment