Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   CVT30_RS17690 Genome accession   NZ_CP024989
Coordinates   4153968..4155377 (+) Length   469 a.a.
NCBI ID   WP_045562655.1    Uniprot ID   A0ABU4MY29
Organism   Streptomyces sp. AMCC400023     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4148968..4160377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT30_RS17675 (CVT30_17900) - 4149142..4150053 (+) 912 WP_045562658.1 hypothetical protein -
  CVT30_RS17680 (CVT30_17905) - 4150177..4152057 (-) 1881 WP_045562657.1 BACON domain-containing protein -
  CVT30_RS17685 (CVT30_17910) - 4152371..4153765 (+) 1395 WP_045562656.1 hypothetical protein -
  CVT30_RS17690 (CVT30_17915) radA/sms 4153968..4155377 (+) 1410 WP_045562655.1 DNA repair protein RadA Machinery gene
  CVT30_RS17695 (CVT30_17920) disA 4155459..4156583 (+) 1125 WP_045562654.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  CVT30_RS17700 (CVT30_17925) - 4156636..4157475 (-) 840 WP_045562653.1 hypothetical protein -
  CVT30_RS17705 (CVT30_17930) - 4157822..4158868 (+) 1047 WP_093791999.1 LLM class flavin-dependent oxidoreductase -
  CVT30_RS17710 (CVT30_17935) - 4159027..4159980 (+) 954 WP_193382171.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49681.78 Da        Isoelectric Point: 7.7379

>NTDB_id=215901 CVT30_RS17690 WP_045562655.1 4153968..4155377(+) (radA/sms) [Streptomyces sp. AMCC400023]
MAARTKTAKDRPAYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTAPGRVTTSAVPIAQVDGRQATARSTGVPEL
DRVLGGGLIPGAVVLLAGEPGVGKSTLLLDAAAKSASAEHPTLYVTGEESASQVRLRADRIGALHDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQSLTVDSQL
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAATDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKVPPGMKVLEVADMGDALRVLPRSRRREAPRDEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=215901 CVT30_RS17690 WP_045562655.1 4153968..4155377(+) (radA/sms) [Streptomyces sp. AMCC400023]
ATGGCTGCCCGTACGAAGACCGCGAAGGACCGCCCGGCATACCGCTGCACGGAATGCGGCTGGCAGACGGCCAAGTGGCT
GGGCCGCTGCCCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCACCCCGGCCGTCCGCACCACGGCCCCCGGCC
GCGTCACGACCTCCGCCGTCCCCATCGCCCAAGTGGACGGCCGCCAGGCCACCGCCCGCTCCACCGGCGTCCCCGAGCTG
GACCGCGTCCTCGGCGGCGGCCTGATCCCCGGCGCCGTGGTCCTCCTCGCCGGCGAGCCCGGCGTGGGCAAGTCCACCCT
CCTCCTCGACGCCGCCGCCAAGTCCGCGAGCGCCGAACACCCCACCCTCTACGTCACCGGCGAGGAGTCGGCCAGCCAGG
TCCGCCTGCGCGCCGACCGCATCGGCGCCCTCCACGACCACCTCTACCTCGCCGCCGAGACCGACCTCTCCGCCGTCCTC
GGCCACTTGGACGCGGTCAAGCCGTCCCTCCTGATCCTCGACTCGGTCCAGACCGTCGCCTCGCCCGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCGACGCTCC
TCGTGGGCCACGTCACCAAGGACGGCGCCATCGCGGGCCCCCGTCTCCTGGAGCACCTGGTCGACGTGGTCCTGAGCTTC
GAGGGCGACCGCCACGCCCGCCTCCGTCTGGTCCGCGGCGTGAAGAACCGCTACGGCGCGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTGACCGACCCCAGCGGTCTGTTCCTCACCCGCCGCGACGAGCCCGTCCCCG
GCACCTGCCTCACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCGGAAGTGCAGTCGCTCACAGTCGACTCGCAGCTC
CCCTCCCCCCGCCGGACCACCTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTGGCGGTCCTGGAGCAGCGCGGCCG
GATCAGCGCCCTCGGCAAGCGGGACATCTACTCGGCGACGGTCGGCGGCGTGAAGCTCTCGGAGCCCGCCGCGGACCTCG
CGATCGCCCTGGCCCTGGCCTCCGCGGCGACCGACACCCCCCTGCCCAAGAACCTGGTGGCGATCGGCGAGGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGGCTGTCCGAAGCACACCGTCTGGGGTTCACGCACGCGCTCGT
TCCGTCCGATCCGGGCAAGGTTCCTCCCGGTATGAAGGTCCTGGAAGTGGCCGACATGGGAGACGCGCTGCGGGTACTGC
CGCGATCCCGTCGTCGAGAGGCCCCACGGGACGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.826

96.588

0.414
  radA Streptococcus mitis SK321

42.667

95.949

0.409
  radA Streptococcus mitis NCTC 12261

42.667

95.949

0.409
  radA Streptococcus pneumoniae Rx1

42.222

95.949

0.405
  radA Streptococcus pneumoniae D39

42.222

95.949

0.405
  radA Streptococcus pneumoniae R6

42.222

95.949

0.405
  radA Streptococcus pneumoniae TIGR4

42.222

95.949

0.405