Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMB_RS01585 Genome accession   NC_003112
Coordinates   313086..313550 (+) Length   154 a.a.
NCBI ID   WP_162467382.1    Uniprot ID   -
Organism   Neisseria meningitidis MC58     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 314275..314943 313086..313550 flank 725


Gene organization within MGE regions


Location: 313086..314943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB_RS01585 (NMB0299) comE 313086..313550 (+) 465 WP_162467382.1 ComEA family DNA-binding protein Machinery gene
  NMB_RS01590 (NMB0300) - 313610..313810 (+) 201 WP_002247658.1 hypothetical protein -
  NMB_RS01595 (NMB0302) - 314291..314943 (+) 653 Protein_299 IS1595 family transposase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16587.88 Da        Isoelectric Point: 10.8645

>NTDB_id=21584 NMB_RS01585 WP_162467382.1 313086..313550(+) (comE) [Neisseria meningitidis MC58]
MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=21584 NMB_RS01585 WP_162467382.1 313086..313550(+) (comE) [Neisseria meningitidis MC58]
TTGCTTTGCCCGGAAAAAATGTCGGTGATGGCGGGACGGCATCCGTACGGTGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGACCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment