Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CVO91_RS00215 Genome accession   NZ_CP024974
Coordinates   30172..30936 (+) Length   254 a.a.
NCBI ID   WP_100664705.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25172..35936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS00195 (CVO91_00195) mreD 25989..26504 (+) 516 WP_004195373.1 rod shape-determining protein MreD -
  CVO91_RS00200 (CVO91_00200) - 26589..27821 (+) 1233 WP_004195374.1 CHAP domain-containing protein -
  CVO91_RS00205 (CVO91_00205) - 27952..28920 (+) 969 WP_004195376.1 ribose-phosphate diphosphokinase -
  CVO91_RS00210 (CVO91_00210) - 29007..30185 (+) 1179 WP_004195378.1 pyridoxal phosphate-dependent aminotransferase -
  CVO91_RS00215 (CVO91_00215) recO 30172..30936 (+) 765 WP_100664705.1 DNA repair protein RecO Machinery gene
  CVO91_RS00220 (CVO91_00220) - 30948..31289 (-) 342 WP_004195383.1 hypothetical protein -
  CVO91_RS00225 (CVO91_00225) comE/blpR 31396..32130 (+) 735 WP_004195385.1 response regulator transcription factor Regulator
  CVO91_RS00230 (CVO91_00230) - 32127..33491 (+) 1365 WP_004195387.1 GHKL domain-containing protein -
  CVO91_RS00235 (CVO91_00235) - 33814..34551 (+) 738 WP_004195389.1 hypothetical protein -
  CVO91_RS00240 (CVO91_00240) - 34579..35454 (+) 876 WP_004195391.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29691.20 Da        Isoelectric Point: 5.4112

>NTDB_id=215769 CVO91_RS00215 WP_100664705.1 30172..30936(+) (recO) [Streptococcus suis strain CZ130302]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIVDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEILTNIFEIQLLGRFGVSLNFYECAFCHRVGL
PFDYSYKYSGVLCPQHYQEDDRRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGVHLKSKKFI
DDLSSWGQIMKPEE

Nucleotide


Download         Length: 765 bp        

>NTDB_id=215769 CVO91_RS00215 WP_100664705.1 30172..30936(+) (recO) [Streptococcus suis strain CZ130302]
ATGGAACGAATTGAAACTAGGGGATTAGTCCTTTATAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
GGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAGTCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ACGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGTAGATTTTCATCAGGTACAGCCATTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCAGATGCGGCCTTGCAGGACAAGGTTTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAATCGGGCTTGGACTATGAAATTTTGACCAATA
TCTTTGAAATTCAGCTCCTGGGACGTTTTGGTGTCAGTCTGAATTTCTATGAGTGTGCTTTTTGTCATCGGGTTGGTCTA
CCTTTTGATTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAGGAAGATGACAGGCGGGCCTATCTGGA
TCCAAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTATGAGGAATATGTAGGCGTCCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAGAAGAATAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

67.717

100

0.677