Detailed information NTG0215737

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: CV098_RS10000
• Genome accession: NZ_CP024958
• Coordinates: 2075328..2076404 (+)
• Length: 358 a.a.
• NCBI ID: WP_010906242.1
• Uniprot ID: Q9CE70
• Organism: Lactococcus lactis subsp. lactis strain G423
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2070328..2081404

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV098_RS09975 (CV098_09975)	pgsA	2070436..2071008 (-)	573	WP_017865076.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
CV098_RS09980 (CV098_09980)	-	2071049..2071945 (-)	897	WP_017865077.1	helix-turn-helix domain-containing protein	-
CV098_RS09985 (CV098_09985)	yfmH	2072209..2073492 (-)	1284	WP_017865078.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
CV098_RS09990 (CV098_09990)	yfmF	2073482..2074768 (-)	1287	WP_017865079.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
CV098_RS09995 (CV098_09995)	yaaA	2074966..2075328 (+)	363	WP_012898492.1	S4 domain-containing protein YaaA	-
CV098_RS10000 (CV098_10000)	recF	2075328..2076404 (+)	1077	WP_010906242.1	DNA replication/repair protein RecF	Machinery gene
CV098_RS10005 (CV098_10005)	-	2076491..2076859 (-)	369	WP_017865080.1	carboxymuconolactone decarboxylase family protein	-
CV098_RS10010 (CV098_10010)	-	2076937..2077314 (+)	378	WP_017865081.1	MerR family transcriptional regulator	-
CV098_RS10015 (CV098_10015)	-	2077327..2078274 (-)	948	WP_026138958.1	alpha/beta hydrolase	-
CV098_RS10020 (CV098_10020)	galE	2078397..2079377 (-)	981	WP_017865083.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41356.23 Da
• Isoelectric Point: 6.8652

>NTDB_id=215737 CV098_RS10000 WP_010906242.1 2075328..2076404(+) (recF) [Lactococcus lactis subsp. lactis strain G423]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=215737 CV098_RS10000 WP_010906242.1 2075328..2076404(+) (recF) [Lactococcus lactis subsp. lactis strain G423]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCATCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAAGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGACAAAGAGCTCATTTCTTGGTCGCAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTGGTCAAAGGTTCTCCTGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCATTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGAGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

3D structure

• AlphaFold DB: Q9CE70

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55	100	0.553
recF	Bacillus subtilis subsp. subtilis str. 168	45.977	97.207	0.447