Detailed information NTG0215672

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PspS04_RS23430
• Genome accession: NZ_CP019427
• Coordinates: 5260183..5261055 (+)
• Length: 290 a.a.
• NCBI ID: WP_159998017.1
• Uniprot ID: -
• Organism: Pseudomonas sp. S04
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5255183..5266055

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PspS04_RS23415 (PspS04_24025)	-	5257730..5258086 (-)	357	WP_095166553.1	BON domain-containing protein	-
PspS04_RS23420 (PspS04_24030)	-	5258280..5258696 (-)	417	WP_095166551.1	pilin	-
PspS04_RS23425 (PspS04_24035)	pilC	5258963..5260180 (+)	1218	WP_159998015.1	type II secretion system F family protein	Machinery gene
PspS04_RS23430 (PspS04_24040)	pilD	5260183..5261055 (+)	873	WP_159998017.1	A24 family peptidase	Machinery gene
PspS04_RS23435 (PspS04_24045)	coaE	5261052..5261675 (+)	624	WP_159998019.1	dephospho-CoA kinase	-
PspS04_RS23440 (PspS04_24050)	yacG	5261672..5261872 (+)	201	WP_095166544.1	DNA gyrase inhibitor YacG	-
PspS04_RS23445 (PspS04_24055)	-	5261869..5262084 (-)	216	WP_095166542.1	hypothetical protein	-
PspS04_RS23450 (PspS04_24060)	-	5262148..5262834 (-)	687	WP_095166540.1	energy-coupling factor ABC transporter permease	-
PspS04_RS23455 (PspS04_24065)	-	5263065..5263304 (+)	240	WP_159998021.1	DUF2790 domain-containing protein	-
PspS04_RS23460 (PspS04_24070)	-	5263299..5264567 (-)	1269	WP_159998023.1	OprD family porin	-
PspS04_RS23465 (PspS04_24075)	-	5264669..5265880 (-)	1212	WP_159998025.1	benzoate/H(+) symporter BenE family transporter	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32107.23 Da
• Isoelectric Point: 7.6848

>NTDB_id=215672 PspS04_RS23430 WP_159998017.1 5260183..5261055(+) (pilD) [Pseudomonas sp. S04]
MPLNEFLASSPTAFMILALGLGLVVGSFLNVLVWRLPSMLARDWRQQAREILELPGEAPGPTYNLMLPHSHCPHCSHPLR
AWENIPLLSYLMLRGRCASCKTPISARYPLIELSCALLSGFIAWHLGFGWQAAGLLVLSWGLLALCLIDADHQLLPDVLV
MPLLWLGVIVNAFELFVPLQDAVWGAVAGYLSLWTVYWLFKLITGKEGIGHGDFKLLALLGAWGGWQILPLTILLASLVG
AVSGLLWLRWKRAKTSTPIPFGPYLAIAGWIAMLWGGQITDFYWQFVGLQ

Nucleotide

• Length: 873 bp

>NTDB_id=215672 PspS04_RS23430 WP_159998017.1 5260183..5261055(+) (pilD) [Pseudomonas sp. S04]
ATGCCCTTGAATGAATTTCTCGCCAGCTCCCCGACGGCCTTCATGATCCTGGCCCTCGGGCTGGGGCTGGTGGTCGGCAG
CTTTCTCAACGTCCTGGTCTGGCGCCTGCCAAGCATGCTCGCTCGAGATTGGCGCCAGCAGGCCCGGGAGATCCTCGAGT
TGCCTGGCGAGGCCCCAGGCCCCACCTACAACCTGATGCTGCCCCACTCCCATTGCCCCCACTGCAGCCATCCACTGCGC
GCCTGGGAGAATATTCCACTGCTCAGCTACCTGATGCTGCGCGGGCGCTGCGCTAGCTGCAAAACCCCGATCAGTGCCCG
TTACCCGCTGATCGAACTCAGTTGCGCGCTGCTCTCGGGCTTTATCGCCTGGCACCTGGGGTTTGGCTGGCAGGCCGCGG
GGCTACTGGTGTTGAGCTGGGGCTTGTTGGCCCTGTGCCTGATCGACGCCGACCATCAGTTACTGCCCGACGTACTGGTC
ATGCCGTTGCTGTGGCTGGGGGTGATCGTCAACGCGTTCGAACTGTTCGTGCCACTCCAGGACGCCGTGTGGGGCGCCGT
AGCCGGCTACCTGAGCTTGTGGACGGTGTATTGGCTGTTCAAGTTGATCACCGGCAAGGAAGGCATCGGCCATGGCGACT
TCAAGCTCCTGGCACTACTGGGGGCCTGGGGTGGCTGGCAGATCTTGCCGCTGACGATCCTGCTGGCCTCACTGGTGGGG
GCGGTCAGCGGACTGCTCTGGCTGCGCTGGAAACGGGCGAAAACCTCGACGCCGATCCCCTTCGGTCCCTATCTGGCAAT
TGCCGGCTGGATTGCCATGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGCAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.901	97.241	0.524
pilD	Vibrio campbellii strain DS40M4	49.645	97.241	0.483
pilD	Neisseria gonorrhoeae MS11	51.953	88.276	0.459
pilD	Acinetobacter nosocomialis M2	46.619	96.897	0.452
pilD	Acinetobacter baumannii D1279779	46.263	96.897	0.448