Detailed information NTG0215663

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PspS04_RS08005
• Genome accession: NZ_CP019427
• Coordinates: 1810255..1812495 (+)
• Length: 746 a.a.
• NCBI ID: WP_159994490.1
• Uniprot ID: -
• Organism: Pseudomonas sp. S04
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1805255..1817495

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PspS04_RS07980 (PspS04_08165)	-	1806380..1807039 (+)	660	WP_159994486.1	transglutaminase family protein	-
PspS04_RS07985 (PspS04_08170)	-	1807083..1807706 (+)	624	WP_159994488.1	glutathione S-transferase	-
PspS04_RS07990 (PspS04_08175)	-	1807840..1808772 (+)	933	WP_095167609.1	ABC transporter ATP-binding protein	-
PspS04_RS07995 (PspS04_08180)	-	1808769..1809548 (+)	780	WP_095167610.1	ABC transporter permease	-
PspS04_RS08000 (PspS04_08185)	-	1809598..1810119 (-)	522	WP_095167612.1	DUF2062 domain-containing protein	-
PspS04_RS08005 (PspS04_08190)	comA	1810255..1812495 (+)	2241	WP_159994490.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PspS04_RS08010 (PspS04_08195)	exbB	1812601..1813236 (+)	636	WP_162530197.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PspS04_RS08015 (PspS04_08200)	-	1813233..1813661 (+)	429	WP_095167615.1	biopolymer transporter ExbD	-
PspS04_RS08020 (PspS04_08205)	lpxK	1813661..1814671 (+)	1011	WP_095167617.1	tetraacyldisaccharide 4'-kinase	-
PspS04_RS08025 (PspS04_08210)	-	1814696..1814881 (+)	186	WP_095167619.1	Trm112 family protein	-
PspS04_RS08030 (PspS04_08215)	kdsB	1814878..1815642 (+)	765	WP_095167621.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PspS04_RS08035 (PspS04_08220)	-	1815642..1816106 (+)	465	WP_159994492.1	low molecular weight protein-tyrosine-phosphatase	-
PspS04_RS08040 (PspS04_08225)	murB	1816103..1817122 (+)	1020	WP_159994494.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 746 a.a.
• Molecular weight: 81943.42 Da
• Isoelectric Point: 10.2105

>NTDB_id=215663 PspS04_RS08005 WP_159994490.1 1810255..1812495(+) (comA) [Pseudomonas sp. S04]
MRTGMLALALGLLTLVFLPALPPVGMLLAMVLLALMLLPFRTYPLALFLLGLVWACSSAQWALDNRLAPELDGQTRWIEG
RVVGLPQYTPGVVRFELADAQARRTEVPKLLRLAWYDGPRVNSGERWRLAVKLKRPVGLLNPHSFDYEAWLLAQRIGATA
TVKDGQRLQPAQWAWRDAVRQRLLAVDAQGREGALAALVLGDSSGLSRADWQVLQDTGTVHLLVISGQHVGLLAGMVYLL
IAGLARYGLWPQRLAWLPWACGLAFAAALGYGLLAGFEVPVRRACVMIGLVLLWRLRFRHLGAWWSWLLALNAVLLLDPM
ASLRPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIALGLCPVLLILNLPISLTGPLVNLLAVPWISLLVLPPAL
LGTLLLPVPYIGEGLLWLAGGLLEGLFGALAWVAGKLPAWVAPAVPLWVWAIAVLGAVLLLLPKGLPLRLLGWPMLLLLV
FAPLRELPEGRAEVWQLDVGQGLAIVVRTRQHTLLYDTGPGFRDSDLGAQVVLPALRKFGVRHLDLMLISHAHADHAGGA
RSIWRGLPVTQVISGEPPDLPDELRALPCVSGKQWEWDGVRFALWHWPGATDSNQNSCVLQIEANGERLLLTGDIDARAE
RVLLDSSLAVHSHWLQAPHHGSRSSSSEAFVRALTPQGVLISRGHGNSFGHPHPQVVERYQRLGVQIYDSAEHGAVRLLL
GDFAAPQAMRRGARFWHRAPSVSPAP

Nucleotide

• Length: 2241 bp

>NTDB_id=215663 PspS04_RS08005 WP_159994490.1 1810255..1812495(+) (comA) [Pseudomonas sp. S04]
ATGCGCACAGGGATGTTGGCGCTCGCACTGGGTCTGTTGACCCTGGTTTTTTTGCCGGCCTTACCACCGGTCGGGATGTT
GCTGGCGATGGTCTTGCTGGCGCTGATGCTGCTGCCGTTTCGCACCTACCCGCTGGCGTTGTTTCTATTGGGCCTGGTGT
GGGCCTGTAGCAGTGCGCAGTGGGCGCTCGATAATCGCCTGGCGCCGGAGCTCGACGGCCAGACCCGCTGGATCGAAGGC
CGGGTCGTGGGCTTGCCGCAGTACACACCCGGCGTGGTGCGCTTTGAGTTGGCCGATGCCCAGGCGCGGCGCACCGAGGT
GCCGAAGTTGCTCCGGCTGGCCTGGTATGACGGGCCGCGGGTCAACAGCGGCGAACGCTGGCGGCTGGCCGTGAAGCTCA
AGCGTCCCGTGGGCCTGCTCAACCCCCATTCCTTTGATTACGAGGCCTGGCTGTTGGCGCAACGCATCGGTGCCACGGCC
ACCGTCAAGGACGGACAGCGCCTGCAGCCTGCGCAATGGGCCTGGCGCGACGCGGTTCGCCAGCGTTTGCTGGCCGTCGA
CGCCCAGGGCCGAGAAGGGGCACTGGCGGCGTTGGTGCTGGGCGACAGCTCTGGGTTGAGCCGTGCCGACTGGCAAGTCC
TGCAGGACACCGGCACCGTGCACTTGCTGGTGATTTCCGGACAGCACGTGGGTTTGCTGGCGGGGATGGTCTATCTGCTG
ATTGCGGGTCTCGCCCGGTATGGCCTGTGGCCGCAGCGCCTGGCGTGGTTGCCCTGGGCCTGTGGCCTGGCGTTCGCCGC
GGCACTGGGCTATGGGTTGCTGGCGGGATTCGAGGTGCCCGTGCGCAGGGCCTGCGTGATGATTGGCCTGGTGTTGTTAT
GGCGCCTGCGCTTTCGTCATCTTGGGGCCTGGTGGTCATGGCTGCTGGCGCTCAATGCAGTGCTGCTGTTGGACCCCATG
GCCAGTTTGCGCCCGGGGTTCTGGCTGTCGTTTGCTGCGGTGGCGGTGTTGATTTTCACCTTTGGCGGGCGACTGGGGCC
GTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAGTGGCTGATTGCGCTGGGCTTATGTCCGGTGCTGTTGATCCTCAACC
TGCCCATCAGCCTCACCGGCCCCTTGGTCAATCTGTTGGCCGTGCCCTGGATCAGCTTGCTGGTCCTGCCCCCAGCCTTA
TTGGGCACGTTATTGCTGCCGGTGCCCTATATCGGGGAGGGCCTGCTGTGGCTGGCTGGCGGTTTGCTCGAGGGGCTGTT
CGGCGCGCTGGCCTGGGTGGCGGGGAAACTGCCGGCCTGGGTGGCGCCGGCAGTACCTCTGTGGGTCTGGGCGATCGCCG
TGCTGGGCGCGGTATTGCTGTTGCTGCCCAAGGGCTTGCCGCTGCGGTTGCTCGGCTGGCCGATGTTGCTGCTCCTGGTG
TTCGCGCCGCTCCGGGAGCTGCCCGAAGGCCGGGCCGAAGTCTGGCAACTGGATGTCGGCCAGGGCCTGGCGATTGTGGT
GCGCACCCGGCAGCACACTCTGCTCTATGACACGGGCCCGGGTTTTCGCGACTCTGACCTCGGAGCGCAGGTGGTCCTGC
CGGCGTTGCGCAAGTTCGGTGTCCGCCACCTGGACCTGATGCTGATCAGTCACGCCCATGCCGATCATGCCGGGGGCGCT
CGCTCGATCTGGCGTGGCCTACCGGTCACGCAGGTGATCAGCGGCGAACCGCCGGACCTGCCGGATGAATTGCGCGCTTT
GCCCTGTGTCAGTGGCAAGCAGTGGGAGTGGGACGGAGTGCGGTTTGCCCTGTGGCATTGGCCTGGGGCGACTGACAGCA
ATCAGAATTCCTGTGTGTTGCAGATTGAGGCCAATGGTGAGCGCCTGCTGCTGACCGGCGATATTGACGCCCGTGCCGAG
CGGGTGTTGCTCGATTCGTCGCTGGCGGTCCATAGCCATTGGTTGCAAGCGCCACACCACGGTAGCCGCAGTTCTTCATC
CGAGGCTTTTGTCCGCGCGCTGACGCCCCAGGGGGTACTGATTTCCCGGGGGCATGGCAACAGCTTCGGTCATCCCCATC
CGCAGGTGGTCGAGCGTTATCAACGCCTGGGAGTGCAGATCTATGACAGTGCCGAGCACGGCGCGGTGCGCCTGCTTCTG
GGGGACTTCGCGGCGCCGCAGGCGATGCGTCGTGGAGCACGTTTCTGGCACAGAGCACCGTCCGTCAGCCCCGCACCCTG
A

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (24-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.335	96.381	0.591