Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PspR84_RS24775 Genome accession   NZ_CP019426
Coordinates   5604831..5606420 (+) Length   529 a.a.
NCBI ID   WP_160060140.1    Uniprot ID   A0A7Z2KXJ1
Organism   Pseudomonas sp. R84     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5599831..5611420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspR84_RS24755 (PspR84_25005) pgeF 5601623..5602345 (-) 723 WP_160059468.1 peptidoglycan editing factor PgeF -
  PspR84_RS24760 (PspR84_25010) rluD 5602342..5603304 (-) 963 WP_122592797.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PspR84_RS24765 (PspR84_25015) - 5603456..5604472 (+) 1017 WP_160059469.1 outer membrane protein assembly factor BamD -
  PspR84_RS24770 (PspR84_25020) - 5604599..5604841 (+) 243 WP_160059470.1 PP0621 family protein -
  PspR84_RS24775 (PspR84_25025) pilS 5604831..5606420 (+) 1590 WP_160060140.1 ATP-binding protein Regulator
  PspR84_RS24780 (PspR84_25030) pilR 5606417..5607763 (+) 1347 WP_160059471.1 sigma-54 dependent transcriptional regulator Regulator
  PspR84_RS24785 (PspR84_25035) thiO 5607879..5608979 (-) 1101 WP_160059472.1 glycine oxidase ThiO -
  PspR84_RS24790 (PspR84_25040) - 5609037..5609438 (-) 402 WP_160059473.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58590.13 Da        Isoelectric Point: 6.2730

>NTDB_id=215649 PspR84_RS24775 WP_160060140.1 5604831..5606420(+) (pilS) [Pseudomonas sp. R84]
MIAEATHADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDELLRGGSWLYLILNILLVVFLENTRRPAQLF
SLALVDVLLLCALFFAAGGVGSALGNLLIVSVAISNTLLRRRIGLLIAAISALGIIGSSVLLSFDHPLSANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDEERRVQLANHSAQTLLAQTHLQGHLID
DYSPAMVDRLQLWMNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVAESREQASER
QQIHLRINSGDFTTLMDPNQLTQILDNLLRNGWRHSALLHDQAEVWLALFTDPDSQLAVLEVQDNGPGVPADEQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=215649 PspR84_RS24775 WP_160060140.1 5604831..5606420(+) (pilS) [Pseudomonas sp. R84]
GTGATCGCTGAGGCCACCCACGCCGACAGCAAACAGGCGCAGCGCCTGCTGCGCCTTTATCATCTCTACCGTTTAAGCGT
CGGCATCACTCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGAATTGCTGCGCG
GCGGCAGTTGGCTGTACCTGATTCTCAACATTCTGTTGGTGGTATTCCTCGAGAACACGCGACGGCCGGCGCAACTGTTC
AGCCTGGCCCTCGTCGATGTCCTGCTTTTATGCGCTTTGTTCTTTGCTGCCGGTGGCGTTGGCAGTGCGCTGGGCAATCT
GCTGATCGTCTCGGTGGCGATCAGCAACACCTTGCTACGCCGGCGCATCGGCCTGTTGATCGCCGCCATCAGCGCGCTGG
GCATCATCGGTTCGAGTGTCCTGCTGAGCTTCGATCATCCCCTGAGCGCCAATGAATACCTGCAAGCCGGCACGCTCGGC
GCCCTGTGCTTTGCCGCATCATTACTGGTGCAGGGTCTGATCCGGCGCCTGGAGGTCAGTGAAACACTGGCCGAACAACG
CGCCAGCGAAGTCGTCGGCCTCGAAGCATTGAACGCATTGATCTTGCAACGCATGCGTACCGGAATTCTGGTGCTCGATG
AAGAACGTCGAGTGCAATTGGCCAACCACAGCGCCCAGACCTTACTCGCGCAAACACATTTGCAGGGCCATCTGATCGAC
GATTACTCGCCGGCTATGGTCGACCGCCTGCAACTGTGGATGAACAATCCGACCCTGCGCCCACAAAGCCTGAAAATTCC
CGGCAATGGTCTGGAGTTGCAACCGAGCTTCATCGCGCTGGAACAAAGCCCCAACCAGCAAACCCTGGTATTTCTCGAAG
ACCTCGCGCAAATCGCCCAGCAGGCTCAGCAACTGAAGCTCGCCGCACTCGGGCGCCTGACCGCCGGCATCTCCCATGAA
ATCCGCAATCCACTTGGTGCCATCAGTCATGCCGCGCAGCTATTGGCTGAGTCCGAGGAACTCGACAGCGCCGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AGAGCGCGCCACAACGGCTGGATCTCAAGCCGTGGCTGGAAAATTTCGTCGCCGAAAGCCGCGAACAGGCCAGCGAGCGC
CAGCAGATTCATCTGCGGATCAATTCAGGGGACTTCACCACGCTGATGGACCCCAATCAGCTCACGCAGATTCTCGACAA
TCTGTTACGCAATGGCTGGCGCCACAGCGCCCTGCTGCATGATCAAGCCGAAGTCTGGCTGGCCCTGTTCACCGATCCCG
ACAGCCAGTTGGCGGTCCTCGAAGTGCAGGACAACGGCCCCGGCGTGCCGGCTGATGAGCAGACGCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTTCAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2KXJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.245

100

0.594

Multiple sequence alignment