Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PspR84_RS24780 Genome accession   NZ_CP019426
Coordinates   5606417..5607763 (+) Length   448 a.a.
NCBI ID   WP_160059471.1    Uniprot ID   A0A7Z2KXQ3
Organism   Pseudomonas sp. R84     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5601417..5612763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspR84_RS24755 (PspR84_25005) pgeF 5601623..5602345 (-) 723 WP_160059468.1 peptidoglycan editing factor PgeF -
  PspR84_RS24760 (PspR84_25010) rluD 5602342..5603304 (-) 963 WP_122592797.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PspR84_RS24765 (PspR84_25015) - 5603456..5604472 (+) 1017 WP_160059469.1 outer membrane protein assembly factor BamD -
  PspR84_RS24770 (PspR84_25020) - 5604599..5604841 (+) 243 WP_160059470.1 PP0621 family protein -
  PspR84_RS24775 (PspR84_25025) pilS 5604831..5606420 (+) 1590 WP_160060140.1 ATP-binding protein Regulator
  PspR84_RS24780 (PspR84_25030) pilR 5606417..5607763 (+) 1347 WP_160059471.1 sigma-54 dependent transcriptional regulator Regulator
  PspR84_RS24785 (PspR84_25035) thiO 5607879..5608979 (-) 1101 WP_160059472.1 glycine oxidase ThiO -
  PspR84_RS24790 (PspR84_25040) - 5609037..5609438 (-) 402 WP_160059473.1 type IV pilin protein -
  PspR84_RS24795 (PspR84_25045) - 5609454..5612537 (-) 3084 WP_160059474.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50027.37 Da        Isoelectric Point: 6.4080

>NTDB_id=215650 PspR84_RS24780 WP_160059471.1 5606417..5607763(+) (pilR) [Pseudomonas sp. R84]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTCCARNLAEAQALLNRESFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGAALRMPAAGGSFTAIDRRLLGDSPPMRSLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRANQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQESVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEVLA
ANMLKRLAKDTGQPPARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAADGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=215650 PspR84_RS24780 WP_160059471.1 5606417..5607763(+) (pilR) [Pseudomonas sp. R84]
TTGAATACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCAGACATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTGCTGCGCACGCAATCTGGCTGAAGCCCAAGCGCTGCTCAACCGCGAGAGCTTCGATCTGT
GCCTGACCGACATGCGCCTGCCCGACGGTACCGGGCTGGAGCTGGTGCAGCATATTCAGCAACGTTATCCACAACTGCCC
GTAGCGATGATCACCGCCTATGGCAGCCTGGAAACGGCCATCAACGCCTTGAAAGCCGGGGCTTTCGACTTCCTGACCAA
ACCGGTCGACCTCACCCGCTTGCGAGAACTGGTCGGCGCCGCCCTGCGCATGCCGGCGGCAGGAGGCAGCTTTACAGCGA
TTGATCGACGCTTGCTGGGCGACTCGCCACCGATGCGCAGTCTGCGCAAGCAAATCGACAAACTCGCCCGCAGTCAGGCG
CCGGTGTATATCAGTGGCGAGTCAGGCAGTGGCAAGGAACTGGTCGCTCGCCTGATCCATGAGCAAGGGCCGCGCGCCAA
CCAGCCGTTCGTGCCGGTCAACTGCGGAGCAATCCCTTCGGAGCTGATGGAAAGCGAATTTTTCGGTCACCGCAAAGGCA
GTTTCACTGGCGCGGTCGAAGACAAGCCGGGGTTGTTCCAGGCGGCCCACGGCGGCACGTTGTTTCTCGATGAAGTGGCG
GACTTGCCGTTGTCGATGCAAGTCAAACTGCTGCGGGCGATTCAGGAGAAAGCCGTGCGCAGTGTTGGCGGCCAGCAGGA
AAGCGTGGTCGATGTGCGGATTCTCTGCGCCACGCACAAGGATCTCGATGCCGAGGTCGCCGCCGAACGCTTTCGTCAGG
ACCTTTATTACCGCTTGAACGTGATTGAACTGCGCGTGCCGTCCCTGCGCGAGCGGCGTGATGACATTGAAGTGCTGGCG
GCCAATATGCTCAAGCGCTTGGCCAAGGACACCGGCCAACCGCCAGCACGACTGCATCCGCAGGCGCTGGAAGCATTGAA
GAACTACCGGTTTCCGGGAAATGTTCGGGAGTTGGAGAACGTTCTCGAACGGGCGCACACCTTGTGCGAAAACCGCACGA
TCGAAGCTGAAGATTTACGTCTGAGCGAAGGCAACTGCGCGGCAGATGGCGGCATTGCCGATCTGACCCAGATCGACAAT
CTTGAGGATTATCTGGAGAACGTCGAGAGGAAGCTGATCTTGCAGGCGCTGGAGGAAACGCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTATCGTTCAGGTCGATGCGCTACAGGCTGAAAAAATTAGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2KXQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.458

98.884

0.786
  pilR Acinetobacter baumannii strain A118

49.237

100

0.504

Multiple sequence alignment