Detailed information NTG0215216

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PchlR47_RS27735
• Genome accession: NZ_CP019399
• Coordinates: 6208129..6209457 (+)
• Length: 442 a.a.
• NCBI ID: WP_038635209.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain R47
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6203129..6214457

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PchlR47_RS27715 (PchlR47_27870)	pgeF	6204628..6205353 (-)	726	WP_009050932.1	peptidoglycan editing factor PgeF	-
PchlR47_RS27720 (PchlR47_27875)	rluD	6205350..6206312 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PchlR47_RS27725 (PchlR47_27880)	-	6206465..6207487 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
PchlR47_RS27730 (PchlR47_27885)	-	6207622..6207855 (+)	234	WP_007924721.1	PP0621 family protein	-
PchlR47_RS27735 (PchlR47_27890)	pilR	6208129..6209457 (+)	1329	WP_038635209.1	sigma-54-dependent transcriptional regulator	Regulator
PchlR47_RS27740 (PchlR47_27895)	thiO	6209454..6210554 (-)	1101	WP_103330734.1	glycine oxidase ThiO	-
PchlR47_RS27745 (PchlR47_27900)	-	6210609..6211010 (-)	402	WP_041987304.1	type IV pilin protein	-
PchlR47_RS27750 (PchlR47_27905)	-	6211024..6214092 (-)	3069	WP_124345178.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48809.14 Da
• Isoelectric Point: 8.7216

>NTDB_id=215216 PchlR47_RS27735 WP_038635209.1 6208129..6209457(+) (pilR) [Pseudomonas chlororaphis strain R47]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHHRLRMPLA
ILSTCARQETAVRVLKAGAIDFLSKPVALARLRELLNGPLPESTPANPATGPLLGNSTAMHKLRGQIHKLAQSQASVYIS
GESGSGKELAARAIHDQGPRASQGFVPINCGAIPPELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=215216 PchlR47_RS27735 WP_038635209.1 6208129..6209457(+) (pilR) [Pseudomonas chlororaphis strain R47]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGTAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGCACCACCGGCTGCGAATGCCGCTGGCC
ATCCTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCGGGTCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCCTGCGCGAGCTGCTGAACGGCCCCCTGCCCGAATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TCGGCAATTCGACCGCCATGCACAAACTGCGTGGACAGATCCACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGCCGCCCGTGCGATTCACGACCAGGGACCACGGGCCAGCCAGGGCTTCGTGCC
GATCAACTGCGGGGCTATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCG
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCACTGGCA
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGACAGCAGGAGGTCCAGGTTGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGACGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAACTGGCGGTGCCACCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCACAGGGCAACGGCCAACAGTTGGCGCGACTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGCGCACACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (133-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.441	100	0.667
pilR	Acinetobacter baumannii strain A118	43.791	100	0.455