Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PspR32_RS18415 Genome accession   NZ_CP019396
Coordinates   3989001..3991223 (-) Length   740 a.a.
NCBI ID   WP_159388994.1    Uniprot ID   -
Organism   Pseudomonas sp. R32     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3984001..3996223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspR32_RS18380 (PspR32_18360) murB 3984393..3985412 (-) 1020 WP_010223214.1 UDP-N-acetylmuramate dehydrogenase -
  PspR32_RS18385 (PspR32_18365) - 3985409..3985873 (-) 465 WP_010223213.1 low molecular weight protein-tyrosine-phosphatase -
  PspR32_RS18390 (PspR32_18370) kdsB 3985873..3986637 (-) 765 WP_036996492.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PspR32_RS18395 (PspR32_18375) - 3986634..3986819 (-) 186 WP_003247142.1 Trm112 family protein -
  PspR32_RS18400 (PspR32_18380) lpxK 3986857..3987867 (-) 1011 WP_010223211.1 tetraacyldisaccharide 4'-kinase -
  PspR32_RS18405 (PspR32_18385) - 3987867..3988298 (-) 432 WP_010223210.1 biopolymer transporter ExbD -
  PspR32_RS18410 (PspR32_18390) exbB 3988295..3988930 (-) 636 WP_010223209.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PspR32_RS18415 (PspR32_18395) comA 3989001..3991223 (-) 2223 WP_159388994.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PspR32_RS18420 (PspR32_18400) - 3991367..3991909 (+) 543 WP_010223207.1 DUF2062 domain-containing protein -
  PspR32_RS18425 (PspR32_18405) - 3991877..3992656 (-) 780 WP_010223206.1 ABC transporter permease -
  PspR32_RS18430 (PspR32_18410) - 3992653..3993585 (-) 933 WP_010223205.1 ABC transporter ATP-binding protein -
  PspR32_RS18435 (PspR32_18415) - 3993740..3994363 (-) 624 WP_159388995.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80207.88 Da        Isoelectric Point: 9.9024

>NTDB_id=215142 PspR32_RS18415 WP_159388994.1 3989001..3991223(-) (comA) [Pseudomonas sp. R32]
MRTGMLALALGLISLGFLPALPSVWGLVLLTVVGLSCLPSRLWPIGLFLLGLSWACVSAQSALDQRLAAELDGRTLWIEG
RVTGLPEQGARSVRFELSAAHSRRAQLPRRIQLSWFGGPAVNSGERWRLAVSLKRPSGLLNPHGPDQEASLLARRIGATG
SVKAGERLAPATAAWRDHLRQRLLAVDAQGREAALAALVLGDGGGLAREDWQALQATGTVHLLVISGQHVGLLAGLVYAL
IAGLARLGWWPPRLPWLPCACALALAAALVYGVLAGFQVPVQRACVMLAMVLLWRLRFRHLGVGLPLLLAMNAVLLWEPL
ASLQPGFWLSFVAVAILIFTFSGRLGAWNPWLAWGRAQWLIAIGLLPVLLAQGLPVSLTAPLINLLAVPWISLAVLPAAL
LGTLLLPVPYLGEGLLWLAGGLLDGLFRMLAEAAVWRPAWLPAALPFWSWLLVCLGAFLLLLPRGLPMRALGWPLLLLAA
FAPRERVPEGQVEVWQLDVGQGLAFILRTRHHAMLYDAGPAMGDFDLGERVVLPSLHKLGVRQLDLMLLSHADADHAGGA
RAVQRGLPVLRVLSGEASALPAVLQAQSCGSGEGWQWDGVNFSLWQWHDAGDSNQDSCVLLVEAQGEKLLLTGDLDARGE
RAWVRDWQAGQVDWLQSPHHGSRSSSSEALLSATAPRGVLISRGRYNAFGHPHPEVMARYRTHGIQAYDNVEHGALRLRL
GAFGEPEGLRAQRRFWREPR

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=215142 PspR32_RS18415 WP_159388994.1 3989001..3991223(-) (comA) [Pseudomonas sp. R32]
ATGCGCACAGGGATGTTGGCGCTTGCGCTCGGGCTGATCAGCCTCGGGTTTCTACCGGCTTTGCCGTCTGTCTGGGGACT
TGTCCTGCTGACAGTTGTCGGACTTTCCTGCTTGCCTTCGCGGCTCTGGCCAATCGGGTTGTTTCTGCTGGGGTTGAGCT
GGGCCTGTGTCTCGGCGCAATCGGCGCTGGACCAGCGTCTGGCGGCAGAACTCGATGGCCGTACCTTGTGGATTGAAGGC
CGGGTCACAGGCTTGCCGGAGCAGGGCGCGCGCTCGGTGCGCTTCGAGCTGAGCGCTGCCCACTCTCGCCGTGCGCAATT
GCCCCGGCGAATACAGCTCAGCTGGTTTGGCGGGCCAGCGGTCAACAGCGGTGAGCGTTGGCGATTGGCCGTCAGCCTCA
AACGCCCCTCCGGTTTGCTCAATCCTCATGGTCCCGATCAGGAAGCGAGCCTGTTGGCCCGGCGTATCGGTGCCACCGGC
AGCGTCAAGGCCGGCGAGCGCCTGGCACCGGCGACAGCGGCCTGGCGCGATCACCTGCGCCAGCGCTTGTTGGCTGTGGA
TGCCCAAGGCCGGGAGGCGGCGCTGGCCGCGCTGGTACTGGGTGATGGCGGCGGGTTGGCGCGCGAAGACTGGCAGGCGT
TGCAGGCAACCGGTACGGTGCACTTGCTGGTGATCTCTGGCCAGCATGTGGGGCTGCTGGCCGGGTTGGTGTATGCCTTG
ATTGCCGGGCTGGCGCGCCTTGGCTGGTGGCCGCCAAGGTTGCCCTGGTTGCCTTGTGCCTGTGCGCTGGCACTTGCCGC
CGCACTGGTCTACGGCGTGCTGGCCGGTTTTCAGGTGCCGGTGCAGCGTGCCTGTGTGATGCTGGCCATGGTGCTGCTCT
GGCGCCTGCGTTTTCGCCATCTGGGCGTTGGCTTGCCGCTGTTGCTGGCGATGAACGCGGTGTTGCTGTGGGAGCCGCTG
GCCAGTTTGCAGCCGGGCTTCTGGTTATCGTTCGTGGCCGTGGCGATTCTGATCTTTACCTTCAGCGGCCGCCTTGGCGC
CTGGAACCCGTGGCTGGCCTGGGGTCGCGCCCAGTGGTTGATCGCCATCGGCTTGTTGCCGGTGTTGCTCGCGCAAGGTT
TGCCGGTGAGCTTGACGGCACCGCTGATCAACCTGCTGGCGGTGCCGTGGATCAGCCTTGCGGTGTTGCCGGCGGCGTTG
CTCGGCACCCTGTTGCTGCCGGTGCCGTATCTGGGGGAGGGGCTGTTGTGGCTGGCCGGTGGCTTGCTCGACGGTTTGTT
CCGGATGTTGGCAGAAGCCGCTGTCTGGCGCCCGGCCTGGCTGCCTGCGGCACTGCCTTTCTGGAGCTGGTTGCTGGTGT
GCCTGGGGGCGTTCCTGCTGCTGTTGCCGCGCGGCTTGCCGATGCGCGCCCTCGGCTGGCCTTTGTTGCTGCTGGCGGCA
TTTGCGCCACGGGAGCGCGTACCCGAGGGCCAGGTGGAGGTCTGGCAACTGGATGTCGGCCAGGGGCTGGCGTTCATCTT
GCGCACCCGTCACCACGCCATGCTCTATGACGCGGGCCCGGCCATGGGCGATTTCGATTTGGGCGAGCGGGTGGTGCTAC
CCAGCTTGCACAAGCTGGGCGTGCGCCAGCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGACCACGCCGGCGGCGCT
CGCGCCGTTCAGCGCGGTTTGCCGGTACTACGGGTGCTCAGTGGCGAAGCGTCGGCCTTGCCTGCTGTGCTACAAGCGCA
ATCTTGCGGTAGCGGCGAGGGTTGGCAGTGGGACGGGGTCAATTTTTCCCTCTGGCAATGGCATGACGCCGGTGATAGCA
ACCAGGATTCCTGTGTGTTGCTGGTCGAGGCGCAAGGCGAGAAGCTGCTGCTCACCGGTGATCTCGATGCCCGTGGCGAG
CGGGCCTGGGTGCGGGATTGGCAGGCGGGCCAGGTCGATTGGCTGCAGTCGCCCCATCACGGCAGCCGCAGTTCCTCCAG
TGAGGCGCTGTTGAGCGCAACCGCCCCGCGTGGCGTGCTGATCTCCCGGGGGCGCTACAACGCCTTCGGTCATCCTCACC
CCGAGGTCATGGCGCGCTATCGGACGCACGGTATCCAGGCTTACGACAATGTCGAACACGGTGCGCTGCGCCTGCGCCTG
GGGGCGTTCGGCGAGCCTGAAGGGCTGCGCGCCCAGCGGCGTTTCTGGCGTGAGCCGAGATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Domain of unknown function (DUF4131) (DUF4131)

(24-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.448

97.162

0.607
  comA Ralstonia pseudosolanacearum GMI1000

33.333

100

0.384

Multiple sequence alignment