Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AM344_RS11240 Genome accession   NZ_CP024886
Coordinates   2118756..2119493 (+) Length   245 a.a.
NCBI ID   WP_021524442.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0017     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2113756..2124493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM344_RS11225 (AM344_11200) clpC 2114210..2116783 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  AM344_RS11230 (AM344_11205) yfiH 2116913..2117644 (-) 732 WP_021524441.1 purine nucleoside phosphorylase YfiH -
  AM344_RS11235 (AM344_11210) rluD 2117641..2118621 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AM344_RS11240 (AM344_11215) comL 2118756..2119493 (+) 738 WP_021524442.1 outer membrane protein assembly factor BamD Machinery gene
  AM344_RS11250 (AM344_11225) raiA 2119763..2120104 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AM344_RS11255 pheL 2120208..2120255 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AM344_RS11260 (AM344_11230) pheA 2120354..2121514 (+) 1161 WP_000200107.1 bifunctional chorismate mutase/prephenate dehydratase -
  AM344_RS11265 (AM344_11235) tyrA 2121557..2122678 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AM344_RS11270 (AM344_11240) aroF 2122689..2123759 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AM344_RS11275 (AM344_11245) yfiL 2123970..2124335 (+) 366 WP_000976008.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27855.48 Da        Isoelectric Point: 6.4874

>NTDB_id=215112 AM344_RS11240 WP_021524442.1 2118756..2119493(+) (comL) [Escherichia coli strain AR_0017]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NISNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=215112 AM344_RS11240 WP_021524442.1 2118756..2119493(+) (comL) [Escherichia coli strain AR_0017]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACATCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

37.903

100

0.384
  comL Neisseria gonorrhoeae MS11

37.097

100

0.376