Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BW242_RS16760 Genome accession   NZ_CP019359
Coordinates   3002534..3003163 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain XH990     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2997534..3008163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BW242_RS16745 (BW242_18270) helD 2997776..2999830 (-) 2055 WP_000420536.1 DNA helicase IV -
  BW242_RS16750 (BW242_18275) yccF 2999953..3000399 (+) 447 WP_001261235.1 YccF domain-containing protein -
  BW242_RS16755 (BW242_18280) yccS 3000409..3002571 (+) 2163 WP_000323868.1 YccS family putative transporter -
  BW242_RS16760 (BW242_18285) sxy/tfoX 3002534..3003163 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BW242_RS16765 (BW242_18290) sulA 3003382..3003891 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  BW242_RS16770 (BW242_18300) ompA 3004248..3005303 (+) 1056 WP_000750414.1 porin OmpA -
  BW242_RS16775 (BW242_18305) matP 3005381..3005833 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  BW242_RS16780 (BW242_18310) ycbZ 3006019..3007779 (+) 1761 WP_021556661.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=215019 BW242_RS16760 WP_000839153.1 3002534..3003163(-) (sxy/tfoX) [Escherichia coli strain XH990]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=215019 BW242_RS16760 WP_000839153.1 3002534..3003163(-) (sxy/tfoX) [Escherichia coli strain XH990]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment