Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BST96_RS08755 Genome accession   NZ_CP019343
Coordinates   1901735..1903105 (+) Length   456 a.a.
NCBI ID   WP_085758338.1    Uniprot ID   -
Organism   Oceanicoccus sagamiensis strain NBRC 107125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1896735..1908105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BST96_RS08735 (BST96_08745) ubiE 1897008..1897763 (-) 756 WP_085758334.1 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE -
  BST96_RS08740 (BST96_08750) - 1897946..1899820 (+) 1875 WP_085758335.1 HDOD domain-containing protein -
  BST96_RS08745 (BST96_08755) - 1899817..1900413 (-) 597 WP_085758336.1 replication protein P -
  BST96_RS08750 (BST96_08760) - 1900415..1901557 (-) 1143 WP_085758337.1 DnaT-like ssDNA-binding domain-containing protein -
  BST96_RS08755 (BST96_08765) radA 1901735..1903105 (+) 1371 WP_085758338.1 DNA repair protein RadA Machinery gene
  BST96_RS08760 (BST96_08770) - 1903199..1905703 (-) 2505 WP_085758339.1 penicillin-binding protein 1A -
  BST96_RS08765 (BST96_08775) pilM 1905877..1906944 (+) 1068 WP_157117909.1 pilus assembly protein PilM Machinery gene
  BST96_RS08770 (BST96_08780) - 1906944..1907510 (+) 567 WP_085758341.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48571.69 Da        Isoelectric Point: 6.4144

>NTDB_id=214958 BST96_RS08755 WP_085758338.1 1901735..1903105(+) (radA) [Oceanicoccus sagamiensis strain NBRC 107125]
MAKRKTAYVCNDCGSDYANWQGQCKDCGAWNTLSEVKLASTPAAAKEARFQGYAGAANGQAVQTLDQINLEQLPRFSSGA
GEFDRVLGGGLVHGSAVLVGGHPGAGKSTLLLQTMCHLAQSMDALYVTGEESLQQVAMRAQRLGLPTDKLNMLSETNVEA
ICAQAEVLKPKVLVVDSIQVVHSEDVTSAPGSVSQVRECAAYLTRYAKQTGTVLFLVGHVTKDGSLAGPKVLEHMIDCSI
LLEGSEDSRFRTLRGQKNRFGAVNELGVFAMTEQGLKEVKNPSAIFLSRTEEPASGSVVMVVWEGTRPLLVEIQALVDDS
PLGNPRRVAVGLEQNRLAMLLAVLHRHGGLQVGDQDVFVNVVGGVKVLETSADLSLLLAIVSSFRNRPLPQDLVVFGEVG
LSGEIRPVPSGQERIYEAAKHGFKRAVVPQANVPKGGVPGMEIVGVSKLVEALEAI

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=214958 BST96_RS08755 WP_085758338.1 1901735..1903105(+) (radA) [Oceanicoccus sagamiensis strain NBRC 107125]
ATGGCTAAACGCAAAACTGCTTATGTCTGCAATGACTGTGGCTCCGACTATGCCAATTGGCAGGGCCAGTGTAAGGATTG
CGGCGCCTGGAATACGCTGTCGGAAGTGAAGCTGGCCTCCACCCCTGCCGCGGCTAAAGAAGCCCGCTTTCAAGGCTATG
CCGGTGCCGCCAATGGCCAGGCCGTACAAACACTCGATCAAATTAATCTGGAACAATTACCCCGCTTTAGTAGTGGTGCA
GGAGAGTTTGACCGTGTGCTGGGGGGTGGCTTGGTGCACGGCTCGGCGGTATTGGTGGGTGGTCACCCCGGCGCCGGTAA
GAGTACGTTGTTATTACAGACCATGTGTCATTTAGCGCAATCTATGGATGCACTCTATGTGACTGGTGAGGAGTCACTGC
AGCAGGTAGCGATGCGCGCCCAGCGCTTGGGCCTGCCTACCGATAAGCTCAATATGCTCTCCGAAACCAATGTGGAGGCC
ATCTGTGCGCAGGCGGAGGTACTTAAACCCAAGGTATTGGTGGTGGATTCTATTCAGGTAGTGCATAGCGAAGATGTGAC
CTCCGCGCCGGGTAGCGTTTCCCAGGTTAGGGAATGTGCCGCTTATCTTACCCGCTATGCCAAACAGACCGGCACTGTGT
TATTTCTGGTGGGGCATGTCACCAAAGATGGCAGCCTGGCCGGACCTAAAGTATTGGAGCATATGATTGATTGCTCGATT
TTGTTGGAAGGCTCGGAAGATAGCCGCTTTAGAACCCTGCGCGGCCAGAAAAATCGCTTTGGAGCGGTCAACGAGTTGGG
TGTGTTTGCTATGACCGAGCAGGGTTTAAAGGAAGTGAAAAACCCCTCGGCTATTTTTCTATCCCGCACCGAAGAGCCCG
CTTCCGGTAGCGTGGTGATGGTAGTGTGGGAAGGCACCCGGCCTTTGCTGGTTGAGATTCAAGCGCTGGTGGATGATTCG
CCTTTGGGCAACCCCAGAAGAGTGGCTGTCGGTTTGGAGCAGAATCGCTTGGCCATGCTATTAGCGGTATTGCATCGCCA
TGGTGGTTTGCAGGTCGGTGATCAGGATGTTTTTGTGAATGTGGTCGGTGGTGTCAAAGTGTTGGAAACCAGTGCTGATT
TATCACTGTTGTTAGCTATTGTCTCCAGTTTTCGCAATCGCCCTTTACCACAGGATTTGGTGGTATTTGGTGAGGTGGGT
TTATCCGGTGAGATTCGCCCTGTACCCAGCGGCCAGGAACGGATTTACGAGGCGGCCAAACACGGTTTTAAAAGGGCGGT
AGTGCCACAGGCGAATGTCCCTAAAGGTGGGGTGCCGGGGATGGAAATTGTAGGGGTTAGTAAATTAGTGGAAGCGCTTG
AGGCGATTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(87-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.835

100

0.485
  radA Streptococcus mitis SK321

43.791

100

0.441
  radA Streptococcus mitis NCTC 12261

43.355

100

0.436
  radA Streptococcus pneumoniae TIGR4

42.795

100

0.43
  radA Streptococcus pneumoniae D39

42.795

100

0.43
  radA Streptococcus pneumoniae Rx1

42.795

100

0.43
  radA Streptococcus pneumoniae R6

42.795

100

0.43

Multiple sequence alignment