Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM342_RS11905 Genome accession   NZ_CP024862
Coordinates   2326580..2327248 (-) Length   222 a.a.
NCBI ID   WP_001521609.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2321580..2332248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM342_RS11875 (AM342_11865) rfaQ 2321758..2322816 (-) 1059 WP_001521608.1 lipopolysaccharide core heptosyltransferase RfaQ -
  AM342_RS11880 (AM342_11870) waaA 2323229..2324506 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  AM342_RS11885 (AM342_11875) coaD 2324514..2324993 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  AM342_RS11890 (AM342_11880) mutM 2325032..2325841 (-) 810 WP_001114542.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  AM342_RS11895 (AM342_11885) rpmG 2325939..2326106 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  AM342_RS11900 (AM342_11890) rpmB 2326127..2326363 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  AM342_RS11905 (AM342_11895) radC 2326580..2327248 (-) 669 WP_001521609.1 DNA repair protein RadC Machinery gene
  AM342_RS11910 (AM342_11900) coaBC 2327420..2328640 (+) 1221 WP_000050153.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AM342_RS11915 (AM342_11905) dut 2328618..2329076 (+) 459 WP_000976070.1 dUTP diphosphatase -
  AM342_RS11920 (AM342_11910) slmA 2329183..2329779 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  AM342_RS11925 (AM342_11915) pyrE 2329816..2330457 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  AM342_RS11930 (AM342_11920) rph 2330523..2331239 (-) 717 WP_001247093.1 ribonuclease PH -
  AM342_RS11940 (AM342_11930) yicC 2331366..2332229 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25304.44 Da        Isoelectric Point: 7.8777

>NTDB_id=214958 AM342_RS11905 WP_001521609.1 2326580..2327248(-) (radC) [Escherichia coli strain AR_0015]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSCVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=214958 AM342_RS11905 WP_001521609.1 2326580..2327248(-) (radC) [Escherichia coli strain AR_0015]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACTGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTTGTGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTAGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAATGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment