Detailed information NTG0214945

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: BST96_RS01105
• Genome accession: NZ_CP019343
• Coordinates: 257114..258472 (+)
• Length: 452 a.a.
• NCBI ID: WP_085756916.1
• Uniprot ID: A0A1X9N6N6
• Organism: Oceanicoccus sagamiensis strain NBRC 107125
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 252114..263472

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BST96_RS01085 (BST96_01085)	rluD	252537..253490 (-)	954	WP_085756912.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
BST96_RS01090 (BST96_01090)	-	253658..254527 (+)	870	WP_338043294.1	outer membrane protein assembly factor BamD	-
BST96_RS01095 (BST96_01095)	nadE	254558..255385 (+)	828	WP_085756914.1	ammonia-dependent NAD(+) synthetase	-
BST96_RS01100 (BST96_01100)	-	255467..257062 (+)	1596	WP_085756915.1	sensor histidine kinase	-
BST96_RS01105 (BST96_01105)	pilR	257114..258472 (+)	1359	WP_085756916.1	sigma-54-dependent transcriptional regulator	Regulator
BST96_RS01110 (BST96_01110)	-	258476..258943 (-)	468	WP_085756917.1	type IV pilin protein	-
BST96_RS01115 (BST96_01115)	-	258963..262280 (-)	3318	WP_085756918.1	VWA domain-containing protein	-
BST96_RS01120 (BST96_01120)	-	262280..262771 (-)	492	WP_085756919.1	pilus assembly PilX family protein	-

Sequence

Protein

• Length: 452 a.a.
• Molecular weight: 49843.75 Da
• Isoelectric Point: 5.0844

>NTDB_id=214945 BST96_RS01105 WP_085756916.1 257114..258472(+) (pilR) [Oceanicoccus sagamiensis strain NBRC 107125]
MSKNSVLIIDDEPDIRELLELTLARMGLETDSADNVANAIDKLNQQQYDLCLTDMKLPDGKGLDIIHHIQKHCPQTPVAM
ITAFGSVETAISALKAGAYDFVSKPIDLDRLRDLVDTALKLPHTAAEIEYSGQVQLLGNAPTIDALRRQITKLSRSQAPV
YISGESGSGKEVVARLIHSNGPRGSNSFVAVNCGAIPSELMESEFFGHIKGSFTGALENKKGLFEAAQGGTLFLDEVADL
PLPMQVKLLRAIQEKAIRKVGSNEEVPIDVRILSATHKDLSQEVEHERFRNDLFYRINVIELQVPPLRERREDIPLLADF
SLDKLSREWQLEKPSLSPQALTALNNHSFPGNVRELENTLERAFTLCEGNTINAEDLQLSAGSPAKNEPASASASAKGAL
GDLDGYLEAMEKEAIMLALEKTRWNKTAAAELLGISFRQMRHRLKKLHLEED

Nucleotide

• Length: 1359 bp

>NTDB_id=214945 BST96_RS01105 WP_085756916.1 257114..258472(+) (pilR) [Oceanicoccus sagamiensis strain NBRC 107125]
ATGAGCAAAAATAGCGTTTTAATTATTGATGATGAGCCCGATATTCGTGAACTGTTAGAACTGACTCTGGCCCGTATGGG
ACTGGAGACAGACAGTGCCGACAATGTCGCCAACGCTATCGATAAACTCAATCAACAGCAATATGATCTATGCCTTACCG
ATATGAAACTACCCGACGGTAAGGGGCTGGACATTATCCATCATATTCAAAAACACTGCCCGCAGACGCCAGTCGCCATG
ATTACGGCTTTCGGTAGCGTTGAGACAGCAATCTCCGCCTTAAAAGCGGGTGCCTATGATTTTGTCAGCAAACCGATTGA
CCTTGATCGGCTCCGTGACCTGGTAGATACCGCCTTAAAATTACCGCATACGGCAGCAGAAATCGAATATAGCGGTCAGG
TACAACTGTTAGGCAATGCACCCACTATTGATGCCTTACGCCGGCAGATCACCAAACTATCGCGCAGCCAGGCCCCAGTC
TATATCAGCGGCGAATCCGGCAGTGGTAAGGAAGTGGTAGCCCGGTTAATTCACAGCAACGGCCCCAGAGGCAGCAATAG
TTTTGTAGCCGTTAACTGCGGCGCGATTCCCTCCGAGTTGATGGAAAGTGAATTCTTTGGCCATATTAAAGGCAGCTTTA
CCGGTGCACTGGAAAATAAAAAGGGCTTATTTGAAGCCGCTCAAGGGGGCACTTTATTTTTGGATGAAGTGGCTGACCTC
CCTCTGCCGATGCAGGTCAAACTGCTGCGAGCGATTCAGGAAAAAGCGATTCGTAAGGTGGGCTCTAATGAAGAAGTCCC
TATTGATGTACGTATTCTCAGCGCCACCCATAAAGACCTAAGCCAGGAAGTAGAACATGAGCGCTTCCGGAATGATTTGT
TTTATCGCATTAATGTAATTGAGTTACAGGTGCCACCGCTGCGAGAGCGCAGAGAGGACATTCCCCTACTGGCTGACTTT
TCCCTCGACAAATTATCCAGAGAATGGCAGCTTGAAAAACCCAGCTTGTCTCCCCAAGCCCTGACAGCACTGAATAATCA
TTCCTTTCCTGGCAATGTCCGGGAATTAGAAAACACGTTGGAAAGAGCCTTTACGCTCTGTGAAGGTAATACTATTAACG
CAGAGGATTTGCAATTATCCGCAGGCAGCCCCGCCAAAAATGAACCGGCCTCGGCGTCAGCCTCTGCAAAGGGCGCACTA
GGTGATTTGGACGGTTATTTGGAAGCCATGGAAAAAGAAGCGATTATGCTGGCGCTGGAAAAAACTCGCTGGAATAAAAC
CGCCGCCGCCGAATTATTGGGCATTTCTTTTCGGCAAATGCGGCATCGTTTGAAAAAATTACATCTGGAAGAAGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (407-447)

• Sigma-54 interaction domain (Sigma54_activat) (137-303)

• Response regulator receiver domain (Response_reg) (6-115)

3D structure

• AlphaFold DB: A0A1X9N6N6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.778	99.558	0.635
pilR	Acinetobacter baumannii strain A118	48.485	100	0.496