Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | BWR11_RS25925 | Genome accession | NZ_CP019338 |
| Coordinates | 5468279..5469151 (+) | Length | 290 a.a. |
| NCBI ID | WP_003141356.1 | Uniprot ID | A0A0H2ZGZ1 |
| Organism | Pseudomonas aeruginosa strain L10 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5463279..5474151
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWR11_RS25905 (BWR11_25970) | - | 5463822..5464520 (-) | 699 | WP_016254081.1 | hypothetical protein | - |
| BWR11_RS25910 (BWR11_25975) | - | 5464584..5465123 (-) | 540 | WP_003141352.1 | pilin | - |
| BWR11_RS25915 (BWR11_25980) | pilB | 5465352..5467055 (+) | 1704 | WP_003141354.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BWR11_RS25920 (BWR11_25985) | pilC | 5467059..5468276 (+) | 1218 | WP_016254080.1 | type II secretion system F family protein | Machinery gene |
| BWR11_RS25925 (BWR11_25990) | pilD | 5468279..5469151 (+) | 873 | WP_003141356.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| BWR11_RS25930 (BWR11_25995) | coaE | 5469148..5469759 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| BWR11_RS25935 (BWR11_26000) | yacG | 5469756..5469956 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| BWR11_RS25940 (BWR11_26005) | - | 5469993..5470202 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| BWR11_RS25945 (BWR11_26010) | - | 5470308..5470997 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| BWR11_RS25950 (BWR11_26015) | - | 5470994..5471464 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| BWR11_RS25955 (BWR11_26020) | - | 5471461..5471886 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| BWR11_RS25960 (BWR11_26025) | - | 5472019..5472648 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| BWR11_RS25965 (BWR11_26030) | - | 5472645..5473094 (+) | 450 | WP_003141357.1 | MOSC domain-containing protein | - |
| BWR11_RS25970 (BWR11_26035) | - | 5473120..5473290 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31813.85 Da Isoelectric Point: 7.7068
>NTDB_id=214921 BWR11_RS25925 WP_003141356.1 5468279..5469151(+) (pilD) [Pseudomonas aeruginosa strain L10]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLGDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLGDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=214921 BWR11_RS25925 WP_003141356.1 5468279..5469151(+) (pilD) [Pseudomonas aeruginosa strain L10]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAATGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCTGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGGCGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAATGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCTGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGGCGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.017 |
99.655 |
0.548 |
| pilD | Vibrio campbellii strain DS40M4 |
53.497 |
98.621 |
0.528 |
| pilD | Acinetobacter nosocomialis M2 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |