Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AM341_RS19860 Genome accession   NZ_CP024859
Coordinates   3850698..3851435 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain AR_0014     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3845698..3856435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM341_RS19830 (AM341_19820) yfiL 3845856..3846221 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  AM341_RS19835 (AM341_19825) aroF 3846431..3847501 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AM341_RS19840 (AM341_19830) tyrA 3847512..3848633 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AM341_RS19845 (AM341_19835) pheA 3848676..3849836 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  AM341_RS26380 pheL 3849935..3849982 (-) 48 WP_010723158.1 phe operon leader peptide -
  AM341_RS19850 (AM341_19840) raiA 3850086..3850427 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AM341_RS19860 (AM341_19850) comL 3850698..3851435 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AM341_RS19865 (AM341_19855) rluD 3851570..3852550 (+) 981 WP_000079099.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AM341_RS19870 (AM341_19860) yfiH 3852547..3853278 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  AM341_RS19875 (AM341_19865) clpC 3853408..3855981 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=214901 AM341_RS19860 WP_000197686.1 3850698..3851435(-) (comL) [Escherichia coli strain AR_0014]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=214901 AM341_RS19860 WP_000197686.1 3850698..3851435(-) (comL) [Escherichia coli strain AR_0014]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment