Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BTM29_RS02980 | Genome accession | NZ_CP019323 |
| Coordinates | 622821..623405 (+) | Length | 194 a.a. |
| NCBI ID | WP_076614089.1 | Uniprot ID | A0A1P8Q178 |
| Organism | Companilactobacillus allii strain WiKim39 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 617821..628405
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BTM29_RS02970 (BTM29_02970) | gyrA | 619744..622293 (+) | 2550 | WP_076614087.1 | DNA gyrase subunit A | - |
| BTM29_RS02975 (BTM29_02975) | rpsF | 622494..622784 (+) | 291 | WP_076614088.1 | 30S ribosomal protein S6 | - |
| BTM29_RS02980 (BTM29_02980) | ssb | 622821..623405 (+) | 585 | WP_076614089.1 | single-stranded DNA-binding protein | Machinery gene |
| BTM29_RS02985 (BTM29_02985) | rpsR | 623425..623661 (+) | 237 | WP_076614090.1 | 30S ribosomal protein S18 | - |
| BTM29_RS02990 (BTM29_02990) | - | 623806..625815 (+) | 2010 | WP_076614091.1 | DHH family phosphoesterase | - |
| BTM29_RS02995 (BTM29_02995) | rplI | 625861..626316 (+) | 456 | WP_076614092.1 | 50S ribosomal protein L9 | - |
| BTM29_RS03000 (BTM29_03000) | dnaB | 626323..627702 (+) | 1380 | WP_076614093.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 21590.95 Da Isoelectric Point: 4.7719
>NTDB_id=214869 BTM29_RS02980 WP_076614089.1 622821..623405(+) (ssb) [Companilactobacillus allii strain WiKim39]
MINRVVLTGRLTRDPELRYTSSGAAVASFTVAVNRTFTNAQGEREADFINCVIWRKSAENFSNFTNKGSLVGIDGRLQTR
SYENQQGQRVYVTEVVVENFSLLESRSESEKRNTGSSNNNFGDNNKSNNSNPNQAPYNNQQNQSSQSPFGNNNSNNNNNQ
SNNNNNNSNNSNNMSDPFADNSKPIDISDDDLPF
MINRVVLTGRLTRDPELRYTSSGAAVASFTVAVNRTFTNAQGEREADFINCVIWRKSAENFSNFTNKGSLVGIDGRLQTR
SYENQQGQRVYVTEVVVENFSLLESRSESEKRNTGSSNNNFGDNNKSNNSNPNQAPYNNQQNQSSQSPFGNNNSNNNNNQ
SNNNNNNSNNSNNMSDPFADNSKPIDISDDDLPF
Nucleotide
Download Length: 585 bp
>NTDB_id=214869 BTM29_RS02980 WP_076614089.1 622821..623405(+) (ssb) [Companilactobacillus allii strain WiKim39]
ATGATTAATCGAGTTGTATTAACTGGACGCCTGACACGTGATCCTGAACTAAGATACACGTCTAGCGGGGCTGCCGTTGC
TAGTTTTACAGTAGCAGTAAATAGAACATTTACTAATGCTCAAGGGGAACGTGAGGCTGATTTTATCAACTGCGTTATCT
GGAGAAAATCTGCTGAGAACTTTTCAAATTTCACTAATAAGGGTTCACTTGTTGGAATAGATGGACGTCTTCAAACACGT
TCATATGAAAATCAACAAGGTCAAAGAGTCTATGTAACCGAAGTTGTTGTTGAAAACTTCTCATTGCTAGAATCAAGATC
CGAAAGTGAGAAGAGAAATACTGGTTCATCAAATAATAATTTTGGTGATAACAATAAGAGCAACAACAGTAATCCCAATC
AAGCTCCATATAATAATCAACAAAATCAATCAAGCCAGTCGCCTTTTGGCAACAACAATTCAAATAATAACAATAATCAA
TCTAACAACAATAATAACAACAGTAACAACTCAAATAATATGAGCGATCCATTTGCTGACAACAGTAAACCAATCGACAT
ATCAGATGACGACTTACCATTCTAA
ATGATTAATCGAGTTGTATTAACTGGACGCCTGACACGTGATCCTGAACTAAGATACACGTCTAGCGGGGCTGCCGTTGC
TAGTTTTACAGTAGCAGTAAATAGAACATTTACTAATGCTCAAGGGGAACGTGAGGCTGATTTTATCAACTGCGTTATCT
GGAGAAAATCTGCTGAGAACTTTTCAAATTTCACTAATAAGGGTTCACTTGTTGGAATAGATGGACGTCTTCAAACACGT
TCATATGAAAATCAACAAGGTCAAAGAGTCTATGTAACCGAAGTTGTTGTTGAAAACTTCTCATTGCTAGAATCAAGATC
CGAAAGTGAGAAGAGAAATACTGGTTCATCAAATAATAATTTTGGTGATAACAATAAGAGCAACAACAGTAATCCCAATC
AAGCTCCATATAATAATCAACAAAATCAATCAAGCCAGTCGCCTTTTGGCAACAACAATTCAAATAATAACAATAATCAA
TCTAACAACAATAATAACAACAGTAACAACTCAAATAATATGAGCGATCCATTTGCTGACAACAGTAAACCAATCGACAT
ATCAGATGACGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.856 |
100 |
0.619 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.051 |
100 |
0.562 |