Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   BWQ98_RS09600 Genome accession   NZ_CP019299
Coordinates   1776733..1777743 (-) Length   336 a.a.
NCBI ID   WP_000990606.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain HKU1-14     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1771733..1782743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWQ98_RS09575 (BWQ98_09590) - 1772989..1773282 (-) 294 WP_000977368.1 hypothetical protein -
  BWQ98_RS09580 (BWQ98_09595) - 1773444..1773896 (+) 453 WP_000079148.1 universal stress protein -
  BWQ98_RS09585 (BWQ98_09600) - 1773931..1775319 (-) 1389 WP_000453137.1 Cof-type HAD-IIB family hydrolase -
  BWQ98_RS09590 (BWQ98_09605) - 1775385..1776347 (+) 963 WP_001124773.1 asparaginase -
  BWQ98_RS09595 (BWQ98_09610) - 1776376..1776669 (-) 294 WP_127245087.1 hypothetical protein -
  BWQ98_RS09600 (BWQ98_09615) ccpA 1776733..1777743 (-) 1011 WP_000990606.1 catabolite control protein A Regulator
  BWQ98_RS09605 (BWQ98_09620) - 1778168..1778767 (-) 600 WP_061753948.1 response regulator transcription factor -
  BWQ98_RS09610 (BWQ98_09625) - 1778769..1779866 (-) 1098 WP_050243493.1 sensor histidine kinase -
  BWQ98_RS09615 (BWQ98_09630) - 1779866..1780603 (-) 738 WP_000832827.1 ABC transporter permease -
  BWQ98_RS09620 (BWQ98_09635) - 1780605..1781489 (-) 885 WP_000219362.1 ABC transporter ATP-binding protein -
  BWQ98_RS09625 (BWQ98_09640) - 1781476..1781670 (-) 195 WP_000820180.1 hypothetical protein -
  BWQ98_RS09630 (BWQ98_09645) - 1781667..1781873 (-) 207 Protein_1802 hypothetical protein -

Sequence


Protein


Download         Length: 336 a.a.        Molecular weight: 37042.99 Da        Isoelectric Point: 5.3212

>NTDB_id=214716 BWQ98_RS09600 WP_000990606.1 1776733..1777743(-) (ccpA) [Streptococcus pneumoniae strain HKU1-14]
MNADDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNITNGYFS
SLAKGIDDIAEMYKYNIVLANSDEDNEKEVSVVNTLFSKQVDGIIYMGYHLTDKIRSEFSRSRTPIVLAGTVDVEHQLPS
VNIDYKQATIDAVSYLAKENERIAFVSGPLVDDINGKVRLVGYKETLKKAGIAYSEGLVFESKYSYDDGYALAERLISSN
ATAAVVTGDELAAGVLNGLADKGVSVPEDFEIITSDDSQISRFTRPNLTTIAQPLYDLGAISMRMLTKIMHKEELEEREV
LLPHGLTERSSTRKRK

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=214716 BWQ98_RS09600 WP_000990606.1 1776733..1777743(-) (ccpA) [Streptococcus pneumoniae strain HKU1-14]
ATGAATGCAGATGATACAGTAACCATTTATGATGTCGCTCGTGAAGCAGGTGTTTCCATGGCGACGGTCAGCCGTGTGGT
CAATGGCAATAAAAATGTAAAAGAGAATACCCGTAAAAAAGTGCTAGAGGTAATTGATCGTTTGGATTATCGTCCAAATG
CAGTTGCGCGTGGTCTTGCAAGTAAAAAGACAACCACTGTCGGTGTCGTGATTCCAAATATTACCAATGGTTATTTTTCG
AGTTTGGCTAAGGGGATTGATGATATTGCAGAAATGTACAAGTACAATATTGTCCTAGCTAATAGCGATGAAGATAACGA
GAAAGAAGTTTCTGTTGTCAATACCCTCTTTTCAAAGCAGGTAGATGGCATTATCTATATGGGTTATCACTTGACAGATA
AAATTCGCTCAGAATTTTCGCGTTCACGTACTCCGATTGTTCTCGCAGGAACTGTCGATGTTGAGCACCAGTTGCCAAGT
GTCAATATTGACTATAAGCAAGCAACAATTGATGCAGTGAGTTACCTTGCTAAAGAAAATGAGCGTATTGCTTTCGTTAG
CGGTCCGCTAGTGGATGACATCAATGGTAAGGTTCGTTTAGTTGGCTACAAGGAAACCTTGAAAAAAGCAGGAATCGCTT
ATAGTGAGGGTTTGGTATTTGAATCTAAATATAGCTATGATGATGGTTACGCCTTAGCAGAGCGTTTGATTTCATCAAAT
GCAACTGCAGCAGTTGTGACAGGTGATGAGTTGGCAGCAGGAGTCTTGAACGGTTTGGCTGATAAGGGTGTTTCTGTGCC
AGAAGATTTTGAAATTATTACTAGTGATGATTCACAAATCTCACGCTTTACCCGTCCAAACTTGACAACGATTGCCCAAC
CTCTTTATGACCTTGGTGCCATTAGTATGCGTATGTTGACCAAGATTATGCATAAGGAAGAGTTGGAAGAACGTGAAGTT
CTCTTACCTCATGGTTTGACAGAACGTAGCTCAACACGAAAACGTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

99.405

100

0.994

  ccpA Streptococcus gordonii str. Challis substr. CH1

87.126

99.405

0.866

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.704

98.512

0.568


Multiple sequence alignment