Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   BWQ98_RS02395 Genome accession   NZ_CP019299
Coordinates   444208..444939 (+) Length   243 a.a.
NCBI ID   WP_000889956.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain HKU1-14     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 439208..449939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWQ98_RS02370 (BWQ98_02370) dnaK 439394..441215 (+) 1822 Protein_441 molecular chaperone DnaK -
  BWQ98_RS02375 (BWQ98_02375) - 441217..441573 (+) 357 WP_000114430.1 hypothetical protein -
  BWQ98_RS02380 (BWQ98_02380) dnaJ 441974..443099 (+) 1126 Protein_443 molecular chaperone DnaJ -
  BWQ98_RS02385 (BWQ98_02390) - 443433..443720 (-) 288 WP_000777753.1 hypothetical protein -
  BWQ98_RS02390 (BWQ98_02395) - 443730..444140 (-) 411 WP_001278322.1 HIT family protein -
  BWQ98_RS02395 (BWQ98_02400) pptA 444208..444939 (+) 732 WP_000889956.1 ABC transporter ATP-binding protein Regulator
  BWQ98_RS02400 (BWQ98_02405) - 444936..445985 (+) 1050 WP_127244993.1 ABC transporter permease -
  BWQ98_RS02405 (BWQ98_02410) - 446153..446482 (-) 330 WP_000132572.1 hypothetical protein -
  BWQ98_RS02410 (BWQ98_02415) - 446758..447096 (+) 339 WP_050115203.1 LytTR family DNA-binding domain-containing protein -
  BWQ98_RS02415 (BWQ98_02420) comE/blpR 447101..447838 (+) 738 WP_001219126.1 response regulator transcription factor Regulator
  BWQ98_RS02420 (BWQ98_02425) - 447852..449192 (+) 1341 WP_127244994.1 sensor histidine kinase -
  BWQ98_RS02425 (BWQ98_02430) blpC 449236..449391 (-) 156 WP_061450964.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27111.62 Da        Isoelectric Point: 4.7848

>NTDB_id=214676 BWQ98_RS02395 WP_000889956.1 444208..444939(+) (pptA) [Streptococcus pneumoniae strain HKU1-14]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGSININGLTLQEDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAIADLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFNMPEASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=214676 BWQ98_RS02395 WP_000889956.1 444208..444939(+) (pptA) [Streptococcus pneumoniae strain HKU1-14]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTCCCTGTCTTGAAAGATGTGTCTTTTACTGTTGAAAGTGG
GCAGTTGGTTGGTTTGATTGGTCTCAATGGTGCTGGGAAATCGACGACGATTAATGAGATTATCGGTCTGTTGACACCTT
ATAGTGGTTCCATCAATATCAATGGCCTGACCCTGCAAGAAGATGCGACTAGTTACCGCAAGCAAATTGGCTACATTCCT
GAGACACCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCCATGGCTTATGGTATTGAGCAGAA
AGTGGCTTTTGAGCGAGTAGAGCCCTTGTTAAAAATGTTCCGTCTGGACCAGAAATTAGACTGGTTTCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTAGATCCGAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTGGATCCGCTGGCGATTGCAGACTTGATTCAGCTTTTGGAAGTGGAAAAGCAAAAGGGCAAGTCCATTCTTAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTTATTCTTCATAAGGGAGAGGTGCGTGCCAAGG
GAAATCTCCTGCAACTGCGCGAAGCCTTTAACATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGAACTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712

Multiple sequence alignment