Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   BWP24_RS02860 Genome accession   NZ_CP019293
Coordinates   574790..575407 (-) Length   205 a.a.
NCBI ID   WP_005428669.1    Uniprot ID   A0AAQ2XXV5
Organism   Vibrio campbellii strain LMB29     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 569790..580407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWP24_RS02845 (BWP24_02885) aceF 570829..572727 (+) 1899 WP_077200210.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  BWP24_RS02850 (BWP24_02890) lpdA 572971..574401 (+) 1431 WP_005446266.1 dihydrolipoyl dehydrogenase -
  BWP24_RS02860 (BWP24_02900) opaR 574790..575407 (-) 618 WP_005428669.1 transcriptional regulator OpaR Regulator
  BWP24_RS02865 (BWP24_02905) hpt 575729..576259 (+) 531 WP_005428667.1 hypoxanthine phosphoribosyltransferase -
  BWP24_RS02870 (BWP24_02910) can 576346..577014 (-) 669 WP_005531727.1 carbonate dehydratase -
  BWP24_RS02875 (BWP24_02915) - 577298..578968 (+) 1671 WP_077200212.1 SulP family inorganic anion transporter -
  BWP24_RS02880 (BWP24_02920) - 579209..580126 (+) 918 WP_077200213.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23738.02 Da        Isoelectric Point: 6.2211

>NTDB_id=214642 BWP24_RS02860 WP_005428669.1 574790..575407(-) (opaR) [Vibrio campbellii strain LMB29]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELTNLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=214642 BWP24_RS02860 WP_005428669.1 574790..575407(-) (opaR) [Vibrio campbellii strain LMB29]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGTCGTGGTGGTCACGCGGATATTGCAGAGATCGCTCAAGTTTCTGTTGCGACGGTAT
TTAACTACTTCCCTACTCGTGAAGATTTGGTGGATGAAGTTCTGAACCACGTTGTGCGTCAGTTCTCTAACTTCTTGTCG
GATAACATCGACTTAGACATCCACGCGCGCGAAAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCATTGGCTGAAAGTTTGGTTTGAGTGGAGCGCATCGACACGTGATGAAGTATGGCCATTGTTCGTGACCACAAACC
GCACTAACCAACTTCTAGTGCAAAACATGTTCATCAAAGCGATCGAGCGTGGTGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCACGGTATTTGCTACTCTATTTTCGTACAAGCAAACCGCTCTAAGAGCGAAGCTGAGTTAAC
GAACCTAGTAAGTGCATACTTAGATATGCTATGCATCTACAACCGTGAACATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

96.078

99.512

0.956
  hapR Vibrio cholerae C6706

71.717

96.585

0.693
  hapR Vibrio cholerae strain A1552

71.717

96.585

0.693

Multiple sequence alignment