Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FORC53_RS26180 Genome accession   NZ_CP019292
Coordinates   293057..293782 (+) Length   241 a.a.
NCBI ID   WP_118894958.1    Uniprot ID   A0AAN1UF56
Organism   Vibrio vulnificus strain FORC_053     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 288057..298782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC53_RS26160 (FORC53_4951) - 290106..290429 (-) 324 WP_020331782.1 hypothetical protein -
  FORC53_RS26165 (FORC53_4952) - 290544..291560 (+) 1017 WP_118894954.1 hypothetical protein -
  FORC53_RS26170 (FORC53_4953) - 291592..292350 (+) 759 WP_020331785.1 hypothetical protein -
  FORC53_RS26175 (FORC53_4954) - 292380..292898 (-) 519 WP_118894956.1 disulfide bond formation protein B -
  FORC53_RS26180 (FORC53_4955) ssb 293057..293782 (+) 726 WP_118894958.1 single-stranded DNA-binding protein Machinery gene
  FORC53_RS26185 (FORC53_4956) - 293926..294186 (+) 261 WP_118894960.1 hypothetical protein -
  FORC53_RS26190 (FORC53_4957) - 294230..294967 (-) 738 WP_118894962.1 hypothetical protein -
  FORC53_RS26195 (FORC53_4959) - 295313..296530 (-) 1218 WP_118894964.1 AAA family ATPase -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26713.96 Da        Isoelectric Point: 6.3291

>NTDB_id=214618 FORC53_RS26180 WP_118894958.1 293057..293782(+) (ssb) [Vibrio vulnificus strain FORC_053]
MASRGINKVILVGNLGNDPEVRAMPNGGNVANITIATSESWRDKATGEQREKTEWHRVSLFGVLADVAAQYLKKGSQVYV
EGQLQTRKWQDQQGQDRYTTEVVVQGYQGVMQMLGGRPQGQPAQGQPAQGQHQGQPAQGQHQGQPSQGQHQGQPAQGNHQ
SYDAPQQFSQPSDQGFPQDNGQPQQYAAPQQHAPQQQYAPQQQHAPQQQHAPQQQHAPQQQHAPQQQFNEPPMDFDDDIP
F

Nucleotide


Download         Length: 726 bp        

>NTDB_id=214618 FORC53_RS26180 WP_118894958.1 293057..293782(+) (ssb) [Vibrio vulnificus strain FORC_053]
ATGGCATCTCGTGGCATAAATAAAGTCATTCTTGTCGGCAATCTAGGTAACGATCCTGAAGTTCGTGCTATGCCGAATGG
TGGTAATGTAGCTAACATAACTATCGCTACTTCTGAGTCATGGCGTGATAAAGCGACAGGCGAGCAACGTGAGAAAACTG
AATGGCACCGCGTGTCACTGTTTGGCGTTCTGGCTGATGTAGCAGCTCAATACCTGAAAAAAGGTTCTCAAGTATACGTC
GAAGGTCAACTTCAAACTCGTAAATGGCAAGATCAGCAAGGTCAAGATCGCTACACAACTGAAGTAGTTGTTCAAGGATA
CCAAGGCGTAATGCAAATGCTTGGTGGTCGCCCACAAGGTCAGCCTGCTCAGGGTCAACCTGCTCAAGGTCAACACCAAG
GTCAACCTGCACAAGGTCAGCACCAGGGTCAACCTTCTCAAGGTCAGCACCAGGGTCAACCTGCACAAGGTAATCATCAG
TCTTATGATGCGCCTCAACAATTCTCTCAGCCGAGCGATCAAGGCTTCCCGCAAGATAATGGTCAACCTCAACAATACGC
TGCTCCGCAACAACATGCTCCACAGCAGCAATATGCTCCACAGCAGCAACATGCTCCACAGCAGCAACATGCTCCGCAAC
AGCAACACGCTCCGCAACAGCAACATGCTCCGCAGCAGCAATTCAATGAGCCGCCAATGGACTTTGATGACGACATCCCT
TTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.144

100

0.556
  ssb Glaesserella parasuis strain SC1401

45.378

98.755

0.448

Multiple sequence alignment