Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   FORC53_RS02955 Genome accession   NZ_CP019290
Coordinates   594196..594813 (-) Length   205 a.a.
NCBI ID   WP_011079558.1    Uniprot ID   Q7MHU7
Organism   Vibrio vulnificus strain FORC_053     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 589196..599813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC53_RS02945 (FORC53_0517) aceF 590486..592378 (+) 1893 WP_118893304.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  FORC53_RS02950 (FORC53_0518) lpdA 592636..594063 (+) 1428 WP_011079557.1 dihydrolipoyl dehydrogenase -
  FORC53_RS02955 (FORC53_0519) opaR 594196..594813 (-) 618 WP_011079558.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  FORC53_RS02960 (FORC53_0520) hpt 595205..595735 (+) 531 WP_011079559.1 hypoxanthine phosphoribosyltransferase -
  FORC53_RS02965 (FORC53_0521) can 595830..596498 (-) 669 WP_013571146.1 carbonate dehydratase -
  FORC53_RS02970 (FORC53_0522) - 596740..598410 (+) 1671 WP_039554598.1 SulP family inorganic anion transporter -
  FORC53_RS02975 (FORC53_0523) - 598577..599500 (+) 924 WP_039554596.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23717.02 Da        Isoelectric Point: 6.1461

>NTDB_id=214591 FORC53_RS02955 WP_011079558.1 594196..594813(-) (opaR) [Vibrio vulnificus strain FORC_053]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHAKENIANITNAMIELVVQDNHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHNPE
DLANLFHGICYSLFVQANRTNNTAELSKLVSSYLDMLCIYKREHE

Nucleotide


Download         Length: 618 bp        

>NTDB_id=214591 FORC53_RS02955 WP_011079558.1 594196..594813(-) (opaR) [Vibrio vulnificus strain FORC_053]
ATGGACTCAATCGCAAAGAGACCGCGAACTCGCTTATCTCCGCTAAAACGTAAACAGCAGCTCATGGAAATTGCACTGGA
AGTGTTTGCTCGTCGTGGCATTGGCCGCGGTGGTCACGCAGACATCGCTGAAATTGCGCAAGTTTCTGTGGCGACCGTCT
TCAACTACTTCCCAACCCGCGAAGATCTTGTAGACGAAGTGCTTAACCATGTCGTTCGTCAGTTTTCTAATTTCCTATCT
GACAACATCGATTTGGATCTTCACGCTAAAGAAAACATCGCCAACATTACCAACGCAATGATTGAGCTGGTGGTGCAAGA
CAATCACTGGTTGAAAGTTTGGTTCGAGTGGAGTGCGTCGACGCGTGACGAAGTTTGGCCTCTGTTTGTCACCACCAACC
GTACTAATCAGTTGCTGGTACAAAACATGTTCATCAAAGCCATTGAACGCGGTGAAGTGTGTGATCAACACAACCCAGAA
GATTTGGCGAACTTGTTCCACGGCATTTGTTACTCGCTGTTTGTTCAAGCAAACCGTACCAACAATACCGCAGAGCTCAG
CAAACTGGTCAGCAGCTACTTAGACATGCTATGCATCTATAAACGCGAGCACGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

92.157

99.512

0.917
  hapR Vibrio cholerae C6706

72.864

97.073

0.707
  hapR Vibrio cholerae strain A1552

72.864

97.073

0.707

Multiple sequence alignment