Detailed information NTG0214584

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC53_RS02650
• Genome accession: NZ_CP019290
• Coordinates: 533738..534730 (+)
• Length: 330 a.a.
• NCBI ID: WP_045596855.1
• Uniprot ID: A0AAN1PM43
• Organism: Vibrio vulnificus strain FORC_053
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 528738..539730

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC53_RS02615 (FORC53_0460)	ftsB	528769..529050 (+)	282	WP_011079514.1	cell division protein FtsB	-
FORC53_RS02620 (FORC53_0461)	ispD	529050..529763 (+)	714	WP_045618620.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC53_RS02625 (FORC53_0462)	ispF	529760..530236 (+)	477	WP_011151152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC53_RS02630 (FORC53_0463)	truD	530272..531315 (+)	1044	WP_011079517.1	tRNA pseudouridine(13) synthase TruD	-
FORC53_RS02635 (FORC53_0464)	surE	531321..532088 (+)	768	WP_011079518.1	5'/3'-nucleotidase SurE	-
FORC53_RS02640 (FORC53_0465)	-	532091..532717 (+)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC53_RS02645 (FORC53_0466)	-	532761..533657 (+)	897	WP_045596856.1	peptidoglycan DD-metalloendopeptidase family protein	-
FORC53_RS02650 (FORC53_0467)	rpoS	533738..534730 (+)	993	WP_045596855.1	RNA polymerase sigma factor RpoS	Regulator
FORC53_RS02655 (FORC53_0468)	mutS	534806..537367 (-)	2562	WP_108678541.1	DNA mismatch repair protein MutS	-
FORC53_RS02660 (FORC53_0469)	pncC	537451..537954 (+)	504	WP_011079523.1	nicotinamide-nucleotide amidase	-
FORC53_RS02665 (FORC53_0470)	recA	538088..539134 (+)	1047	WP_118893271.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38041.08 Da
• Isoelectric Point: 4.4791

>NTDB_id=214584 FORC53_RS02650 WP_045596855.1 533738..534730(+) (rpoS) [Vibrio vulnificus strain FORC_053]
MSISNTVTKVKDFDVNQMDDDFNDDIEINEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLEIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=214584 FORC53_RS02650 WP_045596855.1 533738..534730(+) (rpoS) [Vibrio vulnificus strain FORC_053]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATTTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATTAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACACAGCTCTATCTAGGAGAAATTGGTTTTTCTCCACTATTAACCGCAGAAGAAGAAGTTCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCACGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGCGCGGTAGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCAACTTACGCGACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAACTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGAGATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGTTCTGTCGATACACCGATTGGTGGAGATGGAGAGAAGGCGTTATTGGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGTTATGAGCCTTCAACGCTGGAAGAGGTTGGGCAAGAGATTGGTT
TAACTCGCGAGCGAGTACGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAATTTGTTTGATATAGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70 region 2 (Sigma70_r2) (91-160)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.602	100	0.833