Detailed information NTG0021394

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: L_RS10380
• Genome accession: NC_002662
• Coordinates: 2051081..2052157 (+)
• Length: 358 a.a.
• NCBI ID: WP_010906242.1
• Uniprot ID: Q9CE70
• Organism: Lactococcus lactis subsp. lactis Il1403
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2046081..2057157

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L_RS10355 (L29672)	pgsA	2046241..2046813 (-)	573	WP_010906238.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
L_RS10360 (L30285)	-	2046854..2047750 (-)	897	WP_010906239.1	helix-turn-helix domain-containing protein	-
L_RS10365 (L31393)	yfmH	2047962..2049245 (-)	1284	WP_004254752.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
L_RS10370 (L32666)	yfmF	2049235..2050521 (-)	1287	WP_021214872.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
L_RS10375 (L34138)	yaaA	2050719..2051081 (+)	363	WP_004254746.1	S4 domain-containing protein YaaA	-
L_RS10380 (L0261)	recF	2051081..2052157 (+)	1077	WP_010906242.1	DNA replication/repair protein RecF	Machinery gene
L_RS10385 (L35675)	-	2052244..2052612 (-)	369	WP_004254740.1	carboxymuconolactone decarboxylase family protein	-
L_RS10390 (L35965)	-	2052690..2053067 (+)	378	WP_010906243.1	MerR family transcriptional regulator	-
L_RS10395 (L36511)	-	2053080..2054024 (-)	945	WP_010906244.1	alpha/beta hydrolase	-
L_RS10400 (L0024)	galE	2054147..2055127 (-)	981	WP_010906245.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41356.23 Da
• Isoelectric Point: 6.8652

>NTDB_id=21394 L_RS10380 WP_010906242.1 2051081..2052157(+) (recF) [Lactococcus lactis subsp. lactis Il1403]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=21394 L_RS10380 WP_010906242.1 2051081..2052157(+) (recF) [Lactococcus lactis subsp. lactis Il1403]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCACCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGACAAAGAGCTCATTTCTTGGTCACAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTAGTCAAAGGTTCTCCAGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

3D structure

• AlphaFold DB: Q9CE70

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55	100	0.553
recF	Bacillus subtilis subsp. subtilis str. 168	45.977	97.207	0.447