Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CR916_RS21585 Genome accession   NZ_CP024618
Coordinates   3719701..3720438 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain SMN152SH1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3714701..3725438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR916_RS21570 (CR916_21545) clpC 3715155..3717728 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  CR916_RS21575 (CR916_21550) yfiH 3717858..3718589 (-) 732 WP_062882642.1 purine nucleoside phosphorylase YfiH -
  CR916_RS21580 (CR916_21555) rluD 3718586..3719566 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CR916_RS21585 (CR916_21560) comL 3719701..3720438 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CR916_RS21595 (CR916_21570) raiA 3720709..3721050 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CR916_RS21600 pheL 3721154..3721201 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CR916_RS21605 (CR916_21575) pheA 3721301..3722461 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  CR916_RS21610 (CR916_21580) tyrA 3722504..3723625 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CR916_RS21615 (CR916_21585) aroF 3723636..3724706 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CR916_RS21620 (CR916_21590) yfiL 3724916..3725281 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=213779 CR916_RS21585 WP_000197686.1 3719701..3720438(+) (comL) [Escherichia coli strain SMN152SH1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=213779 CR916_RS21585 WP_000197686.1 3719701..3720438(+) (comL) [Escherichia coli strain SMN152SH1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACT
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCACTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376