Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BVG18_RS02165 Genome accession   NZ_CP019143
Coordinates   458958..459593 (-) Length   211 a.a.
NCBI ID   WP_086044444.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ZS207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 453958..464593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVG18_RS02130 (BVG18_07740) mlaE 454104..454883 (+) 780 WP_004281531.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  BVG18_RS02135 (BVG18_07745) - 454883..455560 (+) 678 WP_086044439.1 outer membrane lipid asymmetry maintenance protein MlaD -
  BVG18_RS02140 (BVG18_07750) - 455579..456211 (+) 633 WP_086044440.1 ABC transporter substrate-binding protein -
  BVG18_RS02145 (BVG18_07755) - 456227..456517 (+) 291 WP_086044441.1 STAS domain-containing protein -
  BVG18_RS02150 (BVG18_07760) - 456765..457778 (-) 1014 WP_086044442.1 CorA family divalent cation transporter -
  BVG18_RS02155 (BVG18_07765) - 457931..458521 (+) 591 WP_086044929.1 TIGR00730 family Rossman fold protein -
  BVG18_RS02160 (BVG18_07770) - 458552..458953 (+) 402 WP_086044443.1 NUDIX domain-containing protein -
  BVG18_RS02165 (BVG18_07775) comF 458958..459593 (-) 636 WP_086044444.1 phosphoribosyltransferase family protein Machinery gene
  BVG18_RS02170 (BVG18_07780) recG 459580..461625 (-) 2046 WP_086044445.1 ATP-dependent DNA helicase RecG -
  BVG18_RS02175 (BVG18_07785) - 461659..462462 (+) 804 WP_086044446.1 NAD-dependent epimerase/dehydratase family protein -
  BVG18_RS02180 (BVG18_07790) - 462673..463905 (+) 1233 WP_004730312.1 transposase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24330.46 Da        Isoelectric Point: 9.2581

>NTDB_id=213376 BVG18_RS02165 WP_086044444.1 458958..459593(-) (comF) [Acinetobacter lwoffii strain ZS207]
MPMFKLLQHGKSWLTRLQPCQLCLTDHQSIHSVCEDCWRQLPWAHQTIQRQEMQFQIACDYAYPMDRLIQLFKYEQKLHL
QNLLAGVLLSLDLPKVSAIVPMPISNERLAERGYNQSLVLAKHVAKQLNVPIWQPITRLKQHSQKGLSRLERIEDIQSQF
QISTISKLRYRRVLIIDDVVTTGSSIRALSQTLEQLGCQKVYAACLAGAQI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=213376 BVG18_RS02165 WP_086044444.1 458958..459593(-) (comF) [Acinetobacter lwoffii strain ZS207]
ATGCCTATGTTTAAATTACTGCAACACGGAAAATCCTGGCTGACCCGCTTACAGCCCTGCCAGCTCTGTCTGACCGATCA
TCAGTCCATTCATTCAGTCTGTGAAGATTGCTGGCGACAATTACCCTGGGCACATCAAACCATTCAACGGCAGGAAATGC
AGTTCCAGATTGCCTGCGACTATGCTTACCCGATGGACCGGCTGATTCAACTGTTTAAATATGAACAGAAGCTGCATTTG
CAAAATTTACTGGCAGGTGTGCTGTTAAGTTTAGACCTACCTAAAGTCAGTGCGATAGTACCGATGCCGATCTCGAATGA
GCGTCTGGCTGAGCGCGGTTATAATCAATCTCTGGTGCTGGCCAAACATGTGGCGAAACAGTTGAATGTACCCATCTGGC
AACCGATTACCCGACTAAAACAACATTCACAGAAAGGTCTAAGCCGGCTGGAGCGGATTGAAGACATCCAATCACAATTC
CAGATCAGTACCATTTCCAAGCTGCGTTACCGTCGGGTGCTGATTATTGATGATGTGGTGACGACCGGCAGCTCGATTCG
AGCACTGAGCCAAACACTTGAACAACTGGGCTGTCAAAAAGTTTATGCAGCCTGTCTGGCAGGTGCTCAAATCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.386

98.104

0.592
  comF Acinetobacter baumannii D1279779

59.903

98.104

0.588

Multiple sequence alignment