Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   BVG18_RS01655 Genome accession   NZ_CP019143
Coordinates   356823..357545 (+) Length   240 a.a.
NCBI ID   WP_005263890.1    Uniprot ID   N9NYI5
Organism   Acinetobacter lwoffii strain ZS207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351823..362545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVG18_RS01640 (BVG18_07260) ponA 352439..354964 (-) 2526 WP_086044382.1 penicillin-binding protein PBP1a -
  BVG18_RS01645 (BVG18_07265) pilM 355130..356188 (+) 1059 WP_005263891.1 pilus assembly protein PilM Machinery gene
  BVG18_RS01650 (BVG18_07270) comN 356188..356826 (+) 639 WP_004281141.1 PilN domain-containing protein Machinery gene
  BVG18_RS01655 (BVG18_07275) comO 356823..357545 (+) 723 WP_005263890.1 type 4a pilus biogenesis protein PilO Machinery gene
  BVG18_RS01660 (BVG18_07280) pilP 357545..358072 (+) 528 WP_004732447.1 pilus assembly protein PilP Machinery gene
  BVG18_RS01665 (BVG18_07285) pilQ 358090..360255 (+) 2166 WP_005263887.1 type IV pilus secretin PilQ family protein Machinery gene
  BVG18_RS01670 (BVG18_07290) aroK 360292..360828 (+) 537 WP_005263885.1 shikimate kinase AroK -
  BVG18_RS01675 (BVG18_07295) aroB 360857..361936 (+) 1080 WP_086044383.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27162.72 Da        Isoelectric Point: 4.5995

>NTDB_id=213372 BVG18_RS01655 WP_005263890.1 356823..357545(+) (comO) [Acinetobacter lwoffii strain ZS207]
MSNEEFDEFSQDVVAVPKNKMTVEKFFQQFNTLDPNNYGSWPLSVKITCWIFIAALAFAVIYFVMIRSTIESISQASAQE
QNLLNEFREKESKLRNLQQYQIQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNSGLKFKNIRLEPEIKQEFFIEQP
IAIEATGDYHAFGSFVSSIAGLSRIVTLHDFTITGTENKEKKSEIPVIDYVVKAKTYRYVGNAEGAAVQPAANSTTQGAQ

Nucleotide


Download         Length: 723 bp        

>NTDB_id=213372 BVG18_RS01655 WP_005263890.1 356823..357545(+) (comO) [Acinetobacter lwoffii strain ZS207]
ATGAGTAATGAAGAATTCGATGAGTTCAGCCAGGATGTCGTCGCTGTACCCAAAAATAAAATGACTGTTGAAAAGTTTTT
TCAGCAATTCAATACATTGGATCCAAATAACTATGGTAGCTGGCCTTTGTCGGTCAAAATTACCTGTTGGATTTTTATTG
CTGCGCTGGCATTTGCGGTGATTTACTTTGTCATGATCAGAAGCACGATTGAGTCAATTTCACAAGCCAGTGCTCAGGAG
CAAAACCTGCTGAATGAATTTCGTGAAAAAGAATCCAAATTACGCAATTTACAACAATATCAAATTCAGCTTCAGGAAAT
GGAAGCCCGTTTTAACCAGCAGTTAGAACAGTTGCCAAAAGAAACTGAAATTCCAGGTCTAGTTGAAGATATTAATCTGA
GCGGTGTGAATTCAGGCTTGAAGTTTAAAAATATCCGTCTGGAACCTGAAATTAAACAAGAGTTCTTTATTGAGCAGCCA
ATTGCGATTGAAGCCACTGGAGATTATCACGCTTTTGGTTCTTTTGTAAGCAGTATTGCCGGCTTATCGCGTATTGTCAC
GCTGCATGATTTCACCATTACCGGTACTGAAAACAAAGAGAAAAAATCTGAAATTCCGGTCATTGATTATGTGGTGAAAG
CCAAAACTTATCGTTATGTTGGTAATGCGGAAGGCGCTGCAGTGCAGCCTGCAGCTAATAGTACTACTCAGGGGGCGCAG
TAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9NYI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.901

100

0.687
  pilO Acinetobacter baumannii D1279779

67.364

99.583

0.671

Multiple sequence alignment