Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LB080_RS00040 | Genome accession | NZ_CP019120 |
| Coordinates | 9252..9827 (+) | Length | 191 a.a. |
| NCBI ID | WP_011543464.1 | Uniprot ID | A0AAV5PJF2 |
| Organism | Lactobacillus delbrueckii subsp. bulgaricus strain DSM 20080 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4252..14827
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LB080_RS00025 (LB080_00025) | gyrB | 4257..6218 (+) | 1962 | WP_076026174.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| LB080_RS00030 (LB080_00030) | gyrA | 6231..8702 (+) | 2472 | WP_003623653.1 | DNA gyrase subunit A | - |
| LB080_RS00035 (LB080_00035) | rpsF | 8918..9211 (+) | 294 | WP_003612647.1 | 30S ribosomal protein S6 | - |
| LB080_RS00040 (LB080_00040) | ssb | 9252..9827 (+) | 576 | WP_011543464.1 | single-stranded DNA-binding protein | Machinery gene |
| LB080_RS00045 (LB080_00045) | rpsR | 9854..10090 (+) | 237 | WP_003622127.1 | 30S ribosomal protein S18 | - |
| LB080_RS00050 (LB080_00050) | - | 10231..12252 (+) | 2022 | WP_076026175.1 | DHH family phosphoesterase | - |
| LB080_RS00055 (LB080_00055) | rplI | 12275..12730 (+) | 456 | WP_014564436.1 | 50S ribosomal protein L9 | - |
| LB080_RS00060 (LB080_00060) | dnaB | 12754..14124 (+) | 1371 | WP_003623658.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 20582.25 Da Isoelectric Point: 4.6437
>NTDB_id=213300 LB080_RS00040 WP_011543464.1 9252..9827(+) (ssb) [Lactobacillus delbrueckii subsp. bulgaricus strain DSM 20080]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNSGFGGQGQSQNTGFNTGFGGGSGYANNAFGSPAQSNGPANAGFNE
DNKKDAGGDTNTNPFDSSDDAINVSNDDLPF
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNSGFGGQGQSQNTGFNTGFGGGSGYANNAFGSPAQSNGPANAGFNE
DNKKDAGGDTNTNPFDSSDDAINVSNDDLPF
Nucleotide
Download Length: 576 bp
>NTDB_id=213300 LB080_RS00040 WP_011543464.1 9252..9827(+) (ssb) [Lactobacillus delbrueckii subsp. bulgaricus strain DSM 20080]
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCGGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGGATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACAGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGTTACGCCAACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAATGAA
GATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAATGA
CGATCTTCCATTTTAA
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCGGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGGATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACAGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGTTACGCCAACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAATGAA
GATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAATGA
CGATCTTCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.333 |
100 |
0.586 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
46.597 |
100 |
0.466 |