Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   BV404_RS17055 Genome accession   NZ_CP019119
Coordinates   481689..483737 (-) Length   682 a.a.
NCBI ID   WP_075989527.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 12605     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 476689..488737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV404_RS17040 clcA 477735..479132 (+) 1398 WP_075989525.1 H(+)/Cl(-) exchange transporter ClcA -
  BV404_RS17045 - 479297..480253 (+) 957 WP_024375464.1 TDT family transporter -
  BV404_RS17050 cqsA 480472..481653 (+) 1182 WP_075989526.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  BV404_RS17055 cqsS 481689..483737 (-) 2049 WP_075989527.1 hybrid sensor histidine kinase/response regulator Regulator
  BV404_RS17060 - 483876..486917 (-) 3042 WP_075989528.1 AAA family ATPase -
  BV404_RS17065 - 486921..488063 (-) 1143 WP_075989529.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 79102.71 Da        Isoelectric Point: 5.3014

>NTDB_id=213296 BV404_RS17055 WP_075989527.1 481689..483737(-) (cqsS) [Vibrio fluvialis strain 12605]
MEVVKKIYQYAEPNLTLVGWMGFIGFPLYYYIWQYVFPQPYESLLLRSFCSCLFGGIAFRNSVPKLWQRYLPYYYLFMIG
FCLPFFFAYMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLLQAAISILAAYGAVYWIQHYEPQQYILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRSILPAQNNISRGAHIDEQDLTLLHEILDNADDV
IHTGNETIDLLLTSIDENRVSRSTFRKQSAREVVDYALHSFSYKRAIDRQSVTLVVEDDFDYFGSDTLLKFALYNLLKNA
FYYQNSEQFHIDVTLKTQGNQNLIVVKDNGVGIAPDRIDDIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNIACASVLGE
WTEFTLSFPLYESQEVSHIKLDLMKNKSVLYIGTQGLMSRHLGETSFYQGFRLHLVTLQEALVREEYEFEYDAIVLDLEQ
IEDHWQSVVELESKLHFTEAQIVYLFDKQREYPINIERHLRVTPLDIRQMLRDTDKELDKLFFDAAELVPDRNVIPQKKQ
TYERRILVVDDNQSLRTFTALMLEKQGYEVVQANDGQQALDAVESSDFDLILMDIEMPFIDGIEATRVIRDSDKPYRHIP
IVGHTGDNSPMTIEKIHKSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=213296 BV404_RS17055 WP_075989527.1 481689..483737(-) (cqsS) [Vibrio fluvialis strain 12605]
ATGGAAGTAGTAAAGAAAATTTACCAGTATGCTGAGCCTAACCTCACCCTCGTGGGGTGGATGGGCTTTATTGGTTTTCC
ACTCTACTACTATATTTGGCAGTACGTCTTTCCACAGCCATACGAATCGTTGCTGCTACGCAGCTTTTGTTCGTGTTTGT
TCGGTGGTATCGCGTTTCGTAATTCCGTACCCAAATTGTGGCAGCGGTATCTGCCGTACTATTACCTGTTTATGATAGGT
TTCTGCCTGCCATTCTTCTTCGCTTATATGATGCTGATGAATGACTGGTCGACCGTATGGGCGATGTCCTTTATGGCATC
GATATTCCTGCACATTCTGCTGGTGCATGAGACCAAAGTTATGCTGCTCCAGGCCGCGATATCCATATTGGCAGCCTACG
GTGCGGTGTATTGGATTCAGCACTATGAGCCGCAACAGTACATTTTGTGGCCGTACGTACCGATTTTCCTATTCACCTAT
GTGTTTGGTAACCTGTTTTATTTCAGGAACCAGAGCTCTCACGAATCAAAAGTCTCCATTGCCAAATCGTTCGGGGCGGG
CATCGCACATGAAATGCGTAACCCGCTGAGTGCATTGAAGTCATCGGTTGATGTATTGCGCTCCATTCTTCCGGCTCAAA
ACAACATCTCACGTGGCGCGCATATTGATGAGCAAGATCTGACGTTGCTGCATGAGATTCTCGATAATGCCGACGACGTT
ATTCACACCGGTAATGAAACCATCGATCTGTTACTGACCTCGATCGACGAGAACCGAGTATCGCGTTCCACGTTCAGGAA
GCAGTCGGCGCGAGAAGTCGTTGACTATGCGTTACATTCGTTCTCCTATAAGCGTGCGATTGATCGTCAATCGGTCACTT
TAGTGGTCGAGGACGACTTCGACTATTTCGGCAGTGATACGCTGTTGAAATTCGCACTGTATAACTTGCTGAAAAACGCC
TTCTATTATCAGAACAGCGAGCAGTTCCATATTGATGTCACCCTGAAAACCCAGGGCAATCAGAACCTCATCGTGGTCAA
AGATAACGGCGTAGGCATTGCGCCGGATCGCATCGACGATATCTTTAAAGATTTTTATACCTTCGGTAAAAATGGCAGCT
ATGGACTTGGATTACCCTTCTGCCGCAAAGTGATGAAATCTTTTGGCGGTAACATTGCGTGTGCGTCAGTGCTGGGGGAA
TGGACCGAATTTACTCTGAGTTTCCCTCTGTATGAGTCGCAGGAAGTCTCACACATCAAACTGGATCTGATGAAAAATAA
ATCCGTTCTGTATATTGGAACACAGGGATTAATGAGCCGCCATTTAGGTGAGACATCGTTTTATCAGGGATTCCGCCTGC
ACCTTGTGACGTTGCAGGAAGCTCTGGTACGCGAAGAGTATGAGTTCGAATATGATGCTATTGTGCTGGATCTCGAACAG
ATTGAAGATCACTGGCAATCGGTGGTCGAACTGGAAAGCAAACTGCACTTTACTGAAGCGCAAATTGTCTACCTGTTTGA
TAAACAGCGGGAATATCCGATCAATATTGAGCGCCATTTACGCGTAACGCCGCTGGATATTCGTCAGATGTTACGGGATA
CGGACAAAGAACTGGACAAACTGTTCTTTGATGCCGCGGAACTGGTTCCGGATCGCAACGTGATCCCACAGAAGAAACAG
ACGTATGAACGCCGTATTCTGGTGGTGGATGATAACCAGTCGCTGCGTACCTTCACTGCGTTGATGCTAGAAAAGCAGGG
TTATGAAGTGGTACAGGCAAATGATGGTCAACAGGCGTTGGATGCGGTCGAGAGCAGCGATTTCGATTTGATCCTGATGG
ATATCGAAATGCCGTTTATCGACGGCATTGAAGCAACACGGGTTATTCGTGATTCGGACAAGCCGTACCGCCACATTCCT
ATTGTCGGGCACACAGGTGATAACAGCCCGATGACGATCGAAAAAATTCATAAATCGGGCATGAACGACTACATCGTTAA
ACCCGCCGATAAAGACAAACTACTTGGTAAACTGGCGAACTGGATCTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-410)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

59.004

100

0.591

Multiple sequence alignment