Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   BV404_RS17050 Genome accession   NZ_CP019119
Coordinates   480472..481653 (+) Length   393 a.a.
NCBI ID   WP_075989526.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 12605     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 475472..486653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV404_RS17035 - 476285..477274 (-) 990 WP_020328472.1 CobW family GTP-binding protein -
  BV404_RS17040 clcA 477735..479132 (+) 1398 WP_075989525.1 H(+)/Cl(-) exchange transporter ClcA -
  BV404_RS17045 - 479297..480253 (+) 957 WP_024375464.1 TDT family transporter -
  BV404_RS17050 cqsA 480472..481653 (+) 1182 WP_075989526.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  BV404_RS17055 cqsS 481689..483737 (-) 2049 WP_075989527.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43523.42 Da        Isoelectric Point: 6.6610

>NTDB_id=213295 BV404_RS17050 WP_075989526.1 480472..481653(+) (cqsA) [Vibrio fluvialis strain 12605]
MKTDAKNNRLPEFIQDRLNFFVRDLIQSNNNGKHLVLGKRPSQGDIVLQSNDYLSLANHPLIRARLKKAIDDTHDSVFMS
AIFLQDDESKPSLEHQLAEFAHFDSCLLSQSGWNANTALLQTICAPGSNVYIDFFAHMSMWEGARYANATIHPFMHNNCD
HLLKQIKRHGPGIIVVDSIYSTIGTIAPLAELVAIAKETGSAILVDESHSLGTHGKNGAGLLAELGLSDQVDFMTASLAK
TFAYRAGVIWANNNVNQCVPFVGYPAIFSSTILPYEIAALEATLDVIKSADERRERLFHNTHILSTGLNRLGINIRSQSQ
IIALETGDERNTEKVRDYLEDNGIFGAVFCRPATSKTKNIIRLSLTSAITAEQIDHILSVCQNAVNRSDLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=213295 BV404_RS17050 WP_075989526.1 480472..481653(+) (cqsA) [Vibrio fluvialis strain 12605]
ATGAAAACTGATGCCAAAAATAATCGGTTACCTGAGTTTATTCAGGACCGTTTAAATTTCTTCGTTCGCGATTTAATTCA
AAGTAATAACAACGGTAAACATCTGGTATTAGGTAAACGCCCTTCACAAGGCGATATTGTTTTACAAAGCAACGATTACC
TCAGTCTGGCTAACCATCCGTTGATTCGTGCGCGTTTGAAAAAGGCCATCGACGATACACATGACAGCGTCTTTATGTCG
GCGATTTTCCTGCAGGATGATGAGTCGAAACCAAGCCTGGAACATCAACTGGCAGAGTTCGCTCACTTTGATTCCTGCCT
GCTGTCGCAATCAGGCTGGAATGCCAATACCGCTTTGCTGCAAACCATCTGCGCTCCGGGAAGTAATGTCTATATTGACT
TCTTTGCTCATATGTCGATGTGGGAAGGCGCTCGTTACGCGAATGCCACTATTCATCCGTTTATGCACAACAACTGCGAC
CATTTACTTAAGCAGATAAAACGCCATGGCCCGGGAATTATCGTCGTCGATTCAATCTACAGCACCATTGGCACCATCGC
GCCGTTAGCTGAATTAGTCGCTATCGCTAAAGAGACCGGCAGCGCTATTCTAGTTGATGAATCGCACTCTCTTGGCACCC
ACGGTAAGAATGGCGCAGGTTTACTGGCAGAGTTAGGCTTATCTGATCAAGTGGATTTTATGACTGCGAGCCTGGCGAAA
ACGTTTGCTTATCGGGCGGGAGTTATCTGGGCAAATAATAACGTCAATCAGTGCGTTCCATTCGTGGGTTATCCGGCGAT
ATTCAGCTCAACAATTTTACCTTATGAAATTGCAGCTCTCGAAGCAACGCTGGATGTGATTAAATCCGCTGATGAACGAC
GTGAGCGTTTATTTCATAATACACATATATTGTCTACGGGATTAAATAGACTTGGTATTAATATTCGCAGTCAATCGCAA
ATAATAGCGTTAGAAACTGGAGATGAAAGAAATACAGAAAAAGTCCGCGATTATTTAGAAGATAACGGTATTTTTGGCGC
AGTATTTTGCCGACCAGCTACATCGAAAACTAAGAATATTATTCGCTTGTCATTAACCAGTGCTATCACCGCTGAACAGA
TCGACCATATTTTGTCGGTCTGCCAAAATGCGGTAAACAGAAGCGACCTCTACTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

69.87

97.964

0.684

Multiple sequence alignment