Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   BV404_RS09705 Genome accession   NZ_CP019118
Coordinates   2076310..2077671 (-) Length   453 a.a.
NCBI ID   WP_155761288.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 12605     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2071310..2082671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV404_RS09670 moaE 2072014..2072469 (-) 456 WP_020327922.1 molybdopterin synthase catalytic subunit MoaE -
  BV404_RS09675 moaD 2072471..2072716 (-) 246 WP_020327923.1 molybdopterin synthase sulfur carrier subunit -
  BV404_RS09680 moaC 2072713..2073192 (-) 480 WP_020327924.1 cyclic pyranopterin monophosphate synthase MoaC -
  BV404_RS09685 moaB 2073202..2073714 (-) 513 WP_020327925.1 molybdenum cofactor biosynthesis protein B -
  BV404_RS09690 moaA 2073786..2074775 (-) 990 WP_038127045.1 GTP 3',8-cyclase MoaA -
  BV404_RS09695 - 2075086..2075976 (+) 891 WP_020327927.1 YvcK family protein -
  BV404_RS09700 luxU 2075965..2076303 (-) 339 WP_020327928.1 quorum-sensing phosphorelay protein LuxU -
  BV404_RS09705 luxO 2076310..2077671 (-) 1362 WP_155761288.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  BV404_RS09710 uvrB 2077958..2079988 (-) 2031 WP_020431742.1 excinuclease ABC subunit UvrB -
  BV404_RS09720 - 2080831..2081484 (+) 654 WP_038127048.1 integrase arm-type DNA-binding domain-containing protein -
  BV404_RS22885 - 2081399..2082160 (-) 762 WP_152490437.1 HAMP domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50361.63 Da        Isoelectric Point: 5.5538

>NTDB_id=213275 BV404_RS09705 WP_155761288.1 2076310..2077671(-) (luxO) [Vibrio fluvialis strain 12605]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEADNPGNQNYQGFIGSSQTMLAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPEVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREITLNMLPPPLNKPSESIISVPKASVEPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=213275 BV404_RS09705 WP_155761288.1 2076310..2077671(-) (luxO) [Vibrio fluvialis strain 12605]
ATGGTCGAAGATACGGCGTCAGTGGCGGCGTTATATCGCTCGTACCTGACTCCGCTAGAGATCGATATCAACATCGTCGG
AACCGGGCGTGAAGCGATCGAAAGTATCGCGCACCGCGAACCGGATCTCATCCTACTCGATCTGCGCCTGCCGGACATGA
CCGGTATGGACGTATTACACGCTGTTAAACAGCGCTCGCCGGATGTACCTGTGATTTTTATGACCGCACATGGTTCAATT
GATACTGCGGTTGAGGCGATGCGTCATGGCGCACAGGATTTCCTCATCAAACCGTGTGAAGCCGACCGCTTACGTGTCAC
GGTAAACAATGCGATTCGTAAAGCCAGCAAGCTGAAGAATGAAGCTGACAACCCAGGTAACCAGAATTACCAAGGCTTTA
TCGGCAGTAGTCAAACCATGCTTGCGGTGTACCGCACCATTGACTCCGCGGCCAGCAGTAAGGCAAGCATCTTCATTACT
GGAGAAAGCGGTACGGGTAAAGAGGTGTGCGCGGAAGCGATTCACGCCGCCAGTCGACGCGGCGACAAACCGTTCATTGC
GATTAACTGTGCCGCGATTCCTAAAGATCTGATTGAAAGTGAATTGTTTGGTCATGTTAAAGGCGCATTTACTGGCGCAG
CAACGGATCGCCAGGGCGCTGCAGAATTGGCCGACGGCGGCACTCTGTTCCTCGATGAGCTGTGCGAAATGGATCTCGAT
CTGCAGACTAAATTGTTGCGCTTTATTCAGACCGGCACCTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTGGATGT
GCGTTTTGTCTGCGCGACCAACCGTGACCCATGGAAAGAAGTGCAGGAAGGCCGTTTCCGTGAAGATTTGTACTACCGTC
TGTACGTCATTCCACTGCATCTGCCGCCTTTACGTGAGCGTGGCGATGATGTCATTGAAATTGCCTATTCGCTGCTGGGC
TATATGTCGAAAGAAGAGGGCAAAGGATTTGTCCGTCTCGCTCCGGAAGTCGTAGAACGTTTTAAACAATACGAATGGCC
AGGTAATGTGCGTCAGCTGCAGAACGTACTGCGCAACGTTGTGGTGCTGAATGAAGGGCGTGAAATCACCCTGAATATGC
TGCCACCACCGCTCAATAAGCCAAGCGAAAGCATCATCAGTGTACCGAAGGCTAGTGTCGAGCCCGTATCGGTTCACGAA
ATCTTCCCGCTGTGGATGACGGAAAAGCAAGCCATTGAGAAAGCGATTGAAGCCTGCGATGGCAATATTCCGCGTGCTGC
CGGTTATCTGGACGTCAGCCCATCCACTATTTATCGCAAACTGCAAACCTGGAACGAGAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

91.256

98.455

0.898
  pilR Pseudomonas aeruginosa PAK

39.732

98.896

0.393

Multiple sequence alignment