Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   CS548_RS00350 Genome accession   NZ_CP024594
Coordinates   80048..82906 (-) Length   952 a.a.
NCBI ID   WP_099810617.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 2805     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 75048..87906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS548_RS00330 (CS548_00310) - 75531..76475 (+) 945 WP_099810615.1 2-dehydropantoate 2-reductase -
  CS548_RS00335 (CS548_00315) - 76611..78227 (-) 1617 WP_004585610.1 ABC-F family ATP-binding cassette domain-containing protein -
  CS548_RS00340 (CS548_00320) - 78503..79522 (-) 1020 WP_005874290.1 NAD(P)-dependent oxidoreductase -
  CS548_RS00345 (CS548_00325) - 79770..80024 (-) 255 WP_004585612.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  CS548_RS00350 (CS548_00330) uvrA 80048..82906 (-) 2859 WP_099810617.1 excinuclease ABC subunit UvrA Machinery gene
  CS548_RS11755 - 83580..83642 (-) 63 WP_230456045.1 hypothetical protein -
  CS548_RS11615 - 83614..83721 (+) 108 WP_179857440.1 DUF1661 domain-containing protein -
  CS548_RS00375 (CS548_00355) - 83945..84127 (-) 183 WP_004585614.1 (2Fe-2S)-binding protein -
  CS548_RS00380 (CS548_00360) - 84399..85673 (-) 1275 WP_021665748.1 DUF2851 family protein -
  CS548_RS00385 (CS548_00365) - 85708..86793 (-) 1086 WP_005874295.1 mannose-1-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 952 a.a.        Molecular weight: 105677.54 Da        Isoelectric Point: 6.1474

>NTDB_id=213264 CS548_RS00350 WP_099810617.1 80048..82906(-) (uvrA) [Porphyromonas gingivalis strain KCOM 2805]
MKQQESEHPTSGEAIIIKGARVNNLKNISLTIPRGKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGRMR
KPECDLIAGVPPAIAIEQRVVSRNPRSTVATSTEIYEYLRLLFARVGRTISPTSGEEVKKHTVADLVAYVADRPIGSKLY
LLVGLQAPQGRSLREHLQIQQQQGYTRIFVAGEMKRIEDILSAETDFSDTASCFLLIDRLVIAEDKADYESRLADSAETA
FFEGNGACLLRIESPEGTVEERMFSNVFEADGRTFQEPSPEMFSFNNPIGACPTCEGFGKVMGIDEDLVVPNKSLSVYEE
CVACWIGAKSQMWKDYFIQKGVPLGFPVHKPYKELSDTERDMLWRGVPTGELDYPSIGIDDYFSMLQRDMHKIQNRVRLA
HFRGKATCPGCRGMRLKPDALCVRIGGRNISELTALTVEETSAFFEGLQLSEDDLHISRRLLEEIGKRLRFLLEVGLGYL
TLDRLSNTLSGGESQRISLATQLGSSLVGSLYVLDEPSIGLHQRDTHRLIGVLKRLRDLGNTVVVVEHDEETIRSADYII
DIGPKAGRQGGEVVYAGEYDRIDKDTPGYTAAYLTGREKIELPRLRRPWNSYIEVREASKHNLKGVNVRFPLHVLTVVTG
VSGSGKSTLVRDLFYEGVKRILEGGSTQGLACEGIVGDIKSVRDIQYVDQNNFGRSTRSNPVTYIGAYDDIRKLYSALPL
SKQMGYQPYFFSFNKEGGRCEVCKGEGSIVVEMQFMADIVLECEECHGKRFRKEILDVEYCGANIYDLLEMTVNQAVEFF
TDHPKAGYTDKIVEKLECLREVGLGYLKLGQSSSTLSGGENQRVKLAAYLGQAKPAPTLFIFDEPTTGLHIHDIRTLLHA
LSALIDKGHSVVVVEHNMEMIKSADCIIDLGPEGGGAGGYLVATGTPEEVMRCDASYTGKWLKEILGNKQRG

Nucleotide


Download         Length: 2859 bp        

>NTDB_id=213264 CS548_RS00350 WP_099810617.1 80048..82906(-) (uvrA) [Porphyromonas gingivalis strain KCOM 2805]
ATGAAGCAGCAGGAAAGCGAGCATCCCACAAGTGGCGAAGCCATCATCATCAAAGGGGCACGCGTCAATAATCTGAAGAA
TATATCGCTGACTATACCGCGGGGCAAGCTGGTCGTGGTGACCGGACTGTCCGGTTCGGGCAAGAGTTCTTTAGCTTTCG
ATACGCTCTATGCGGAAGGCCAGAGACGTTACGTGGAGAGCCTGTCTGCCTATGCGCGTCAGTTTCTGGGAAGGATGCGC
AAGCCGGAGTGCGACTTGATCGCCGGTGTGCCTCCTGCCATTGCCATCGAGCAACGCGTGGTAAGCCGCAATCCGAGGAG
TACCGTAGCCACATCGACCGAGATATACGAGTACCTGCGCCTGCTCTTTGCTCGCGTAGGCAGGACCATCTCTCCGACAA
GCGGAGAGGAGGTGAAAAAGCATACGGTGGCCGATCTGGTCGCTTACGTTGCCGATCGACCTATCGGCTCCAAACTGTAT
CTTCTGGTAGGGCTGCAAGCCCCTCAAGGACGTAGTCTGCGTGAGCACTTGCAGATCCAACAGCAGCAGGGCTATACGCG
CATTTTCGTTGCCGGGGAGATGAAGCGGATCGAGGACATTTTATCCGCCGAAACTGATTTCTCCGATACGGCCTCCTGCT
TCCTGCTTATCGATCGGCTGGTGATTGCAGAGGACAAGGCGGACTATGAGTCGCGTCTTGCGGATTCGGCCGAGACAGCT
TTTTTCGAAGGAAACGGGGCGTGCCTGCTGCGCATCGAAAGCCCGGAAGGAACGGTGGAGGAACGGATGTTCAGCAATGT
GTTCGAAGCCGATGGGCGTACCTTTCAGGAGCCGAGTCCGGAGATGTTCAGCTTCAACAATCCTATCGGGGCATGCCCTA
CTTGCGAAGGTTTCGGGAAGGTAATGGGGATCGATGAGGATCTGGTGGTACCGAACAAGTCTCTCTCTGTCTATGAAGAA
TGTGTAGCTTGCTGGATAGGGGCCAAGTCGCAGATGTGGAAGGACTATTTCATCCAAAAGGGTGTGCCACTGGGTTTTCC
CGTACACAAGCCCTACAAAGAGCTATCCGATACCGAACGCGATATGCTGTGGCGTGGTGTACCCACGGGAGAACTGGATT
ACCCGAGTATCGGTATCGATGACTATTTCTCTATGCTGCAGAGGGATATGCACAAGATTCAGAACCGTGTCCGGCTGGCG
CATTTTCGTGGCAAAGCCACCTGCCCCGGTTGTCGTGGGATGCGACTCAAGCCGGATGCTCTGTGCGTGAGAATAGGCGG
ACGGAATATATCGGAGCTGACGGCTCTGACTGTAGAGGAGACGTCGGCATTTTTCGAGGGGCTACAGCTATCGGAAGACG
ATCTACATATAAGCAGACGGCTGTTGGAGGAGATAGGCAAGCGGCTACGCTTCCTGCTCGAAGTGGGGTTGGGGTATCTG
ACACTTGACCGCCTGTCCAATACGCTCTCGGGTGGAGAGAGCCAGCGCATCAGTCTGGCTACGCAGCTCGGCAGCAGCTT
GGTGGGTTCGCTCTACGTGCTGGACGAGCCGAGTATCGGTCTGCATCAGCGAGATACGCATCGGCTTATCGGTGTTCTGA
AGCGACTGCGCGATCTGGGCAATACCGTTGTAGTCGTCGAGCATGACGAGGAGACAATCCGGTCAGCTGATTATATCATC
GACATAGGGCCGAAGGCCGGCCGCCAAGGCGGCGAAGTGGTCTATGCCGGCGAGTATGACCGCATAGACAAGGATACTCC
GGGCTATACGGCGGCTTATCTGACGGGACGAGAGAAGATCGAACTGCCACGCCTGCGTCGTCCATGGAACTCATATATCG
AAGTTCGGGAAGCCTCGAAGCACAATCTGAAAGGGGTGAATGTCCGATTCCCACTGCACGTGCTGACGGTGGTGACCGGT
GTGAGCGGATCGGGAAAGAGTACCTTGGTGCGCGATCTTTTCTACGAAGGAGTAAAAAGGATTCTCGAAGGAGGCAGCAC
ACAAGGGTTAGCCTGCGAGGGCATCGTCGGGGACATCAAGTCTGTCCGAGACATTCAGTACGTGGATCAGAACAATTTCG
GTCGCAGCACCCGCTCCAACCCGGTCACGTACATAGGTGCTTACGATGATATTCGCAAGCTCTACAGTGCATTGCCACTG
TCCAAACAGATGGGATACCAGCCCTATTTCTTCAGTTTCAATAAGGAAGGGGGCCGCTGCGAGGTCTGCAAAGGAGAGGG
CAGTATCGTGGTGGAGATGCAGTTCATGGCCGATATCGTATTGGAGTGTGAAGAGTGTCATGGCAAACGTTTCCGCAAGG
AGATTCTCGATGTGGAGTACTGCGGCGCGAATATTTACGACTTGCTGGAGATGACGGTCAATCAGGCCGTTGAATTTTTC
ACCGATCATCCGAAAGCCGGCTACACGGACAAGATAGTGGAGAAGCTCGAATGTCTTCGAGAGGTCGGACTCGGGTATCT
CAAACTGGGACAGAGCAGCAGTACACTCTCCGGTGGGGAAAACCAACGCGTCAAGCTGGCTGCATATCTGGGACAAGCCA
AACCCGCACCCACGCTTTTTATCTTCGACGAACCGACTACGGGCTTACATATCCATGATATTCGTACCTTGCTGCACGCA
CTGAGTGCTCTTATCGACAAAGGGCATTCGGTAGTGGTGGTAGAGCACAATATGGAGATGATCAAGAGTGCCGACTGTAT
CATCGACTTAGGCCCTGAGGGTGGAGGTGCCGGTGGTTATTTGGTCGCAACAGGTACGCCCGAAGAGGTAATGCGATGCG
ATGCCTCCTATACGGGAAAGTGGTTGAAAGAGATATTGGGAAACAAACAAAGAGGTTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(305-369)

UvrA interaction domain (UvrA_inter)

(142-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

45.005

99.895

0.45
  uvrA Streptococcus pneumoniae TIGR4

45.005

99.895

0.45
  uvrA Streptococcus pneumoniae D39

45.005

99.895

0.45

Multiple sequence alignment