Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   BV404_RS01980 Genome accession   NZ_CP019118
Coordinates   414315..414932 (-) Length   205 a.a.
NCBI ID   WP_024374317.1    Uniprot ID   M1KD28
Organism   Vibrio fluvialis strain 12605     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 409315..419932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV404_RS01970 aceF 410612..412507 (+) 1896 WP_075988156.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  BV404_RS01975 lpdA 412766..414193 (+) 1428 WP_020331989.1 dihydrolipoyl dehydrogenase -
  BV404_RS01980 opaR 414315..414932 (-) 618 WP_024374317.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  BV404_RS01985 hpt 415253..415780 (+) 528 WP_020331991.1 hypoxanthine phosphoribosyltransferase -
  BV404_RS01990 can 415831..416499 (-) 669 WP_020331992.1 carbonate dehydratase -
  BV404_RS01995 - 416843..417760 (+) 918 WP_020331993.1 ABC transporter ATP-binding protein -
  BV404_RS02000 - 417765..418535 (+) 771 WP_020331995.1 ABC transporter permease -
  BV404_RS02005 panC 418594..419475 (-) 882 WP_032082019.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23890.30 Da        Isoelectric Point: 6.2346

>NTDB_id=213264 BV404_RS01980 WP_024374317.1 414315..414932(-) (opaR) [Vibrio fluvialis strain 12605]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFL
TDNIDLDIHAKENLTNITDEMVKLANEDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQLLVKNMFSKAIERGEVCEQHDP
EDLATLFHGVCYSLFVQANRVRDEGYMRKLVKSYLDMLCIYKRDH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=213264 BV404_RS01980 WP_024374317.1 414315..414932(-) (opaR) [Vibrio fluvialis strain 12605]
ATGGACGCATCTATAGAGAAACGCCCTAGAACGCGGCTATCTCCTCAAAAACGTAAACTCCAGTTGATGGAAATCGCGCT
GGAAGTGTTTGCAAAACGAGGCATTGGCCGTGGTGGTCATGCGGATATAGCAGAAATTGCTCAAGTTTCTGTCGCCACCG
TGTTCAACTACTTCCCTACTCGTGAAGACTTAGTCGACGACGTACTGACTTACGTGGTTCGCCAGTTTTCCAACTTCCTC
ACCGACAACATCGATCTCGATATCCACGCGAAAGAGAACCTCACCAACATCACCGATGAAATGGTTAAGCTGGCCAATGA
AGATTGCCACTGGCTGAAAGTGTGGTTTGAATGGAGCGCCTCGACGCGTGACGAAGTATGGCCACTGTTTGTCTCCAGTA
ACCGTACCAACCAGTTGCTGGTGAAGAACATGTTCTCGAAAGCCATCGAGCGCGGTGAAGTGTGTGAACAGCACGACCCT
GAAGATCTGGCGACGCTGTTCCACGGTGTCTGCTACTCACTGTTTGTGCAAGCTAACCGCGTTCGCGATGAAGGCTACAT
GCGTAAACTGGTGAAAAGCTACCTGGATATGCTGTGCATCTATAAACGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M1KD28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81.188

98.537

0.8
  hapR Vibrio cholerae C6706

78.713

98.537

0.776
  hapR Vibrio cholerae strain A1552

78.713

98.537

0.776

Multiple sequence alignment