Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CS546_RS09825 Genome accession   NZ_CP024593
Coordinates   2160267..2160890 (+) Length   207 a.a.
NCBI ID   WP_021665264.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 2804     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2155267..2165890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS546_RS09810 (CS546_09750) nrdG 2157553..2158044 (+) 492 WP_004584586.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  CS546_RS09815 (CS546_09755) - 2158156..2158434 (+) 279 WP_004584585.1 HU family DNA-binding protein -
  CS546_RS09820 (CS546_09760) - 2158756..2160270 (+) 1515 WP_004584583.1 Rne/Rng family ribonuclease -
  CS546_RS09825 (CS546_09765) recR 2160267..2160890 (+) 624 WP_021665264.1 recombination mediator RecR Machinery gene
  CS546_RS09830 (CS546_09770) - 2160897..2161424 (+) 528 WP_021665263.1 GNAT family N-acetyltransferase -
  CS546_RS09835 (CS546_09775) ligA 2161412..2163421 (+) 2010 WP_099811285.1 NAD-dependent DNA ligase LigA -
  CS546_RS09840 (CS546_09780) - 2163434..2164669 (+) 1236 WP_099811287.1 ABC transporter permease -
  CS546_RS09845 (CS546_09785) - 2164958..2165233 (-) 276 WP_099896779.1 hypothetical protein -
  CS546_RS09850 (CS546_09790) - 2165472..2165645 (-) 174 WP_230456085.1 hypothetical protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23085.42 Da        Isoelectric Point: 5.6348

>NTDB_id=213258 CS546_RS09825 WP_021665264.1 2160267..2160890(+) (recR) [Porphyromonas gingivalis strain KCOM 2804]
MIQKYPSRLLEKAIDQFATLPGVGRKTALRLALYLLRQPVENTRQFAAALVDLREHISYCRRCHNISDSDVCTICADPTR
DQSTLCVVENIRDVMAIENTSQYRGLYHVLGGVISPMDGIGPGDLQIDSLVHRVASEQIHEVILALSTTMEGDTTNFFLF
RKLEPTGVRVSVIARGIAIGDEIEYADEITLGRSILNRTDFSDSVKF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=213258 CS546_RS09825 WP_021665264.1 2160267..2160890(+) (recR) [Porphyromonas gingivalis strain KCOM 2804]
ATGATACAGAAATATCCTTCGCGTCTGCTTGAGAAGGCGATAGACCAATTTGCTACATTGCCGGGTGTAGGGCGCAAGAC
AGCCCTGCGCCTGGCTTTGTACTTATTGCGCCAACCTGTGGAAAATACCCGTCAATTTGCAGCAGCCCTTGTAGATCTTC
GGGAACATATTTCCTATTGCAGGCGCTGTCATAATATCAGTGATTCCGATGTTTGTACTATCTGTGCAGACCCCACTCGG
GATCAGAGTACACTCTGCGTAGTAGAGAATATCCGTGACGTTATGGCTATCGAGAATACCTCACAGTATCGAGGCTTGTA
TCATGTACTCGGTGGAGTCATATCTCCCATGGATGGGATCGGCCCGGGCGATTTGCAAATAGATTCTTTGGTGCATCGAG
TAGCTTCTGAGCAGATTCATGAGGTTATATTGGCTTTGAGTACGACGATGGAGGGCGATACTACCAACTTTTTCCTCTTT
CGCAAGTTGGAGCCTACCGGCGTTCGGGTCAGTGTAATTGCTCGAGGCATTGCTATAGGCGATGAGATCGAATATGCCGA
TGAGATTACCCTCGGTCGTTCTATTCTCAATCGTACCGATTTCTCCGACTCAGTCAAATTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-174)

RecR protein (RecR_ZnF)

(43-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.744

96.135

0.469
  recR Streptococcus pneumoniae R6

46.701

95.169

0.444
  recR Bacillus subtilis subsp. subtilis str. 168

44.444

95.652

0.425

Multiple sequence alignment