Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PA5319 Genome accession   NC_002516
Coordinates   5988646..5989320 (-) Length   224 a.a.
NCBI ID   NP_254006.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa PAO1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5983646..5994320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA5313 - 5983820..5985154 (+) 1335 NP_254000.1 omega amino acid--pyruvate transaminase -
  PA5314 - 5985219..5985581 (+) 363 NP_254001.1 hypothetical protein -
  PA5315 rpmG 5985716..5985871 (-) 156 NP_254002.1 50S ribosomal protein L33 -
  PA5316 rpmB 5985883..5986119 (-) 237 NP_254003.1 50S ribosomal protein L28 -
  PA5317 - 5986475..5988055 (+) 1581 NP_254004.1 dipeptide ABC transporter substrate-binding protein -
  PA5318 - 5988081..5988629 (+) 549 NP_254005.1 hypothetical protein -
  PA5319 radC 5988646..5989320 (-) 675 NP_254006.1 DNA repair protein RadC Machinery gene
  PA5320 coaC 5989460..5990668 (+) 1209 NP_254007.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase -
  PA5321 dut 5990676..5991131 (+) 456 NP_254008.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  PA5322 algC 5991168..5993774 (+) 2607 NP_254009.2 phosphomannomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24934.68 Da        Isoelectric Point: 7.2089

>NTDB_id=21325 PA5319 NP_254006.1 5988646..5989320(-) (radC) [Pseudomonas aeruginosa PAO1]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLSFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=21325 PA5319 NP_254006.1 5988646..5989320(-) (radC) [Pseudomonas aeruginosa PAO1]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGTAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGTCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCCTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397