Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CS545_RS04865 Genome accession   NZ_CP024592
Coordinates   1072462..1073100 (-) Length   212 a.a.
NCBI ID   WP_232519021.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 2803     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1067462..1078100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS545_RS04850 (CS545_04820) - 1068578..1069663 (+) 1086 WP_099840619.1 IS5 family transposase -
  CS545_RS11115 - 1070026..1070199 (-) 174 WP_173568180.1 hypothetical protein -
  CS545_RS04860 (CS545_04830) hcp 1070586..1072238 (-) 1653 WP_077094572.1 hydroxylamine reductase -
  CS545_RS04865 (CS545_04835) radC 1072462..1073100 (-) 639 WP_232519021.1 DNA repair protein RadC Machinery gene
  CS545_RS04875 (CS545_04845) - 1073527..1076733 (+) 3207 WP_077094570.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23252.79 Da        Isoelectric Point: 6.6421

>NTDB_id=213217 CS545_RS04865 WP_232519021.1 1072462..1073100(-) (radC) [Porphyromonas gingivalis strain KCOM 2803]
MIRLGARCLTDAELLAILIGSGNDRQTAIQLAQDILAKMDNSLPRLAKCDIQELTASFRGMGPAKAVTVMAAMELSRRIP
SQEMPRRESITDSRMAYRTISPFLTDLPQEEMWVLLLNQSGKIISTENLSRGGVSETSADVRLIMHKAVSHLASAIILAH
NHPSGTVRPSEQDIQLTQRVQKAATLLGFRLNDHLIIGDDGAYFSFADEGLL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=213217 CS545_RS04865 WP_232519021.1 1072462..1073100(-) (radC) [Porphyromonas gingivalis strain KCOM 2803]
ATGATCCGACTCGGTGCTCGCTGCCTGACCGATGCCGAACTGCTGGCCATCCTCATCGGATCGGGTAATGACCGGCAGAC
AGCCATCCAACTGGCTCAAGATATTCTGGCCAAGATGGATAACAGCCTGCCACGTCTAGCCAAATGCGACATACAAGAGC
TGACCGCTAGCTTCCGAGGTATGGGACCGGCAAAAGCAGTCACCGTGATGGCAGCAATGGAACTGTCCCGCCGTATCCCT
TCGCAAGAGATGCCCCGCAGAGAATCCATTACCGATAGTCGAATGGCCTATCGAACTATAAGCCCATTTCTCACAGACCT
GCCGCAGGAAGAAATGTGGGTGTTACTCCTCAACCAAAGCGGAAAGATAATCAGTACGGAGAACCTTAGCCGAGGAGGTG
TATCGGAGACTTCGGCCGATGTCCGTCTGATCATGCACAAAGCCGTCTCTCATCTTGCCTCGGCAATCATTCTGGCACAC
AATCATCCTTCAGGAACGGTACGCCCAAGTGAACAGGATATTCAGCTTACTCAAAGGGTGCAAAAGGCTGCCACATTGCT
CGGATTTCGACTGAACGACCATCTGATCATCGGTGACGATGGGGCATATTTCAGTTTCGCTGACGAAGGCCTTCTCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(91-211)

UPF0758 N-terminal (UPF0758_N)

(1-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

37.799

98.585

0.373
  radC Streptococcus pneumoniae TIGR4

37.561

96.698

0.363