Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   BV884_RS17155 Genome accession   NZ_CP019114
Coordinates   3565845..3566663 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain MDR-CQ     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3560845..3571663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV884_RS17140 (BV884_17220) pilE 3561062..3561487 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  BV884_RS17145 (BV884_17225) pilY2 3561484..3561966 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  BV884_RS17150 (BV884_17230) pilY1 3561979..3565833 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  BV884_RS17155 (BV884_17235) pilX 3565845..3566663 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BV884_RS17160 (BV884_17240) pilW 3566660..3567661 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  BV884_RS17165 (BV884_17245) pilV 3567662..3568222 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  BV884_RS17170 (BV884_17250) fimU 3568216..3568689 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  BV884_RS17175 (BV884_17255) ispH 3568859..3569809 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BV884_RS17180 (BV884_17260) gmk 3569932..3570561 (+) 630 WP_000015937.1 guanylate kinase -
  BV884_RS17185 (BV884_17265) rpoZ 3570634..3570912 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  BV884_RS17190 - 3570951..3571080 (+) 130 Protein_3331 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=213177 BV884_RS17155 WP_000149374.1 3565845..3566663(-) (pilX) [Acinetobacter baumannii strain MDR-CQ]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=213177 BV884_RS17155 WP_000149374.1 3565845..3566663(-) (pilX) [Acinetobacter baumannii strain MDR-CQ]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment