Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   SAS_RS05075 Genome accession   NC_002953
Coordinates   1031628..1032197 (-) Length   189 a.a.
NCBI ID   WP_000287268.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus MSSA476     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1026628..1037197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAS_RS05055 (SAS0956) - 1028133..1029491 (+) 1359 WP_000021864.1 TrkH family potassium uptake protein -
  SAS_RS05060 (SAS0957) - 1029630..1031141 (+) 1512 WP_000414172.1 bifunctional metallophosphatase/5'-nucleotidase -
  SAS_RS05075 (SAS0958) comK/comK1 1031628..1032197 (-) 570 WP_000287268.1 competence protein ComK Regulator
  SAS_RS05080 (SAS0959) - 1032407..1032625 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  SAS_RS05085 (SAS0960) - 1032706..1033692 (-) 987 WP_000668820.1 lipoate--protein ligase -
  SAS_RS05090 (SAS0961) - 1033891..1034067 (+) 177 WP_000214898.1 YkvS family protein -
  SAS_RS05095 (SAS0962) - 1034082..1034684 (+) 603 WP_001033867.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  SAS_RS15195 - 1034940..1035002 (+) 63 WP_228764722.1 hypothetical protein -
  SAS_RS05105 - 1035541..1035642 (+) 102 WP_031893173.1 hypothetical protein -
  SAS_RS14545 (SAS0964) - 1035652..1035924 (+) 273 WP_001797239.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22626.82 Da        Isoelectric Point: 9.7253

>NTDB_id=21309 SAS_RS05075 WP_000287268.1 1031628..1032197(-) (comK/comK1) [Staphylococcus aureus subsp. aureus MSSA476]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYRVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=21309 SAS_RS05075 WP_000287268.1 1031628..1032197(-) (comK/comK1) [Staphylococcus aureus subsp. aureus MSSA476]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
CGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACAGGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995

Multiple sequence alignment