Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A5958_RS24590 Genome accession   NZ_CP024479
Coordinates   4582678..4583415 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2011C-4315     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4577678..4588415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A5958_RS24555 yfiL 4577836..4578201 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  A5958_RS24560 aroF 4578411..4579481 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  A5958_RS24565 tyrA 4579492..4580613 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  A5958_RS24570 pheA 4580656..4581816 (-) 1161 WP_000200118.1 bifunctional chorismate mutase/prephenate dehydratase -
  A5958_RS24575 pheL 4581915..4581962 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  A5958_RS24580 raiA 4582066..4582407 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  A5958_RS24590 comL 4582678..4583415 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  A5958_RS24595 rluD 4583550..4584530 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A5958_RS24600 yfiH 4584527..4585258 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  A5958_RS24605 clpC 4585388..4587961 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=213083 A5958_RS24590 WP_000197686.1 4582678..4583415(-) (comL) [Escherichia coli strain 2011C-4315]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=213083 A5958_RS24590 WP_000197686.1 4582678..4583415(-) (comL) [Escherichia coli strain 2011C-4315]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376