Detailed information
Bioinformatically predicted
Overview
| Name | scnR | Type | Regulator |
| Locus tag | BVL65_RS04400 | Genome accession | NZ_CP019058 |
| Coordinates | 993520..994221 (+) | Length | 233 a.a. |
| NCBI ID | WP_076002863.1 | Uniprot ID | - |
| Organism | Gardnerella swidsinskii strain GV37 | ||
| Function | regulate comX expression (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 944788..994221 | 993520..994221 | within | 0 |
Gene organization within MGE regions
Location: 944788..994221
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BVL65_RS04140 (BVL65_04140) | - | 944788..945648 (-) | 861 | WP_081378931.1 | IS3 family transposase | - |
| BVL65_RS04145 (BVL65_04145) | - | 946245..946877 (+) | 633 | WP_076002709.1 | sigma-70 family RNA polymerase sigma factor | - |
| BVL65_RS04150 (BVL65_04150) | - | 946979..947158 (+) | 180 | WP_004114712.1 | hypothetical protein | - |
| BVL65_RS04155 (BVL65_04155) | - | 947170..947472 (+) | 303 | WP_076002836.1 | cell division protein ZapD | - |
| BVL65_RS04160 (BVL65_04160) | - | 947465..948595 (+) | 1131 | WP_076002837.1 | DUF2800 domain-containing protein | - |
| BVL65_RS04165 (BVL65_04165) | - | 948600..949148 (+) | 549 | WP_004117141.1 | DUF2815 family protein | - |
| BVL65_RS04170 (BVL65_04170) | - | 949375..952278 (+) | 2904 | WP_076002838.1 | DNA polymerase | - |
| BVL65_RS04175 (BVL65_04175) | - | 952375..953166 (+) | 792 | WP_076002713.1 | phage antirepressor KilAC domain-containing protein | - |
| BVL65_RS04180 (BVL65_04180) | - | 953159..953527 (+) | 369 | WP_076002714.1 | DUF4406 domain-containing protein | - |
| BVL65_RS04185 (BVL65_04185) | - | 953521..955740 (+) | 2220 | WP_231130933.1 | phage/plasmid primase, P4 family | - |
| BVL65_RS04190 (BVL65_04190) | - | 956139..956474 (+) | 336 | WP_020760708.1 | hypothetical protein | - |
| BVL65_RS04195 (BVL65_04195) | - | 956446..956736 (+) | 291 | WP_076002715.1 | VRR-NUC domain-containing protein | - |
| BVL65_RS04200 (BVL65_04200) | - | 956717..958156 (+) | 1440 | WP_076002839.1 | DEAD/DEAH box helicase | - |
| BVL65_RS04205 (BVL65_04205) | - | 958116..958544 (+) | 429 | WP_018645368.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| BVL65_RS04210 (BVL65_04210) | - | 958697..961135 (+) | 2439 | WP_076002840.1 | glycoside hydrolase domain-containing protein | - |
| BVL65_RS04215 (BVL65_04215) | - | 961195..961608 (-) | 414 | WP_004117112.1 | hypothetical protein | - |
| BVL65_RS04220 (BVL65_04220) | - | 961716..962075 (+) | 360 | WP_014554460.1 | HNH endonuclease | - |
| BVL65_RS04225 (BVL65_04225) | - | 962236..962787 (+) | 552 | WP_076002841.1 | P27 family phage terminase small subunit | - |
| BVL65_RS04230 (BVL65_04230) | - | 962799..963302 (+) | 504 | WP_004125754.1 | NUMOD4 domain-containing protein | - |
| BVL65_RS04235 (BVL65_04235) | - | 963295..964080 (+) | 786 | WP_076002842.1 | S-adenosylmethionine synthetase N-terminal domain-containing protein | - |
| BVL65_RS04240 (BVL65_04240) | - | 964095..965330 (+) | 1236 | WP_076003163.1 | site-specific DNA-methyltransferase | - |
| BVL65_RS04245 (BVL65_04245) | - | 965429..966079 (+) | 651 | WP_076002843.1 | virulence protein | - |
| BVL65_RS07545 | - | 966063..966227 (+) | 165 | WP_196768813.1 | hypothetical protein | - |
| BVL65_RS04250 (BVL65_04250) | - | 966390..966674 (+) | 285 | WP_076002844.1 | transcriptional regulator | - |
| BVL65_RS04255 (BVL65_04255) | - | 966825..967049 (+) | 225 | WP_065189446.1 | hypothetical protein | - |
| BVL65_RS04260 (BVL65_04260) | - | 967173..968765 (+) | 1593 | WP_076002845.1 | terminase TerL endonuclease subunit | - |
| BVL65_RS04265 (BVL65_04265) | - | 968777..970066 (+) | 1290 | WP_076002846.1 | phage portal protein | - |
| BVL65_RS04270 (BVL65_04270) | - | 970023..970757 (+) | 735 | WP_081378933.1 | head maturation protease, ClpP-related | - |
| BVL65_RS04275 (BVL65_04275) | - | 970760..971944 (+) | 1185 | WP_076002847.1 | phage major capsid protein | - |
| BVL65_RS04280 (BVL65_04280) | - | 971975..972253 (+) | 279 | WP_004125785.1 | head-tail connector protein | - |
| BVL65_RS04285 (BVL65_04285) | - | 972254..972586 (+) | 333 | WP_076002848.1 | phage head closure protein | - |
| BVL65_RS04290 (BVL65_04290) | - | 972583..972963 (+) | 381 | WP_016815970.1 | HK97 gp10 family phage protein | - |
| BVL65_RS04295 (BVL65_04295) | - | 972956..973294 (+) | 339 | WP_016815973.1 | hypothetical protein | - |
| BVL65_RS04300 (BVL65_04300) | - | 973278..973850 (+) | 573 | WP_076002849.1 | major tail protein | - |
| BVL65_RS04305 (BVL65_04305) | - | 973868..974233 (+) | 366 | WP_076002850.1 | hypothetical protein | - |
| BVL65_RS04310 (BVL65_04310) | - | 974522..975178 (+) | 657 | WP_032812428.1 | hypothetical protein | - |
| BVL65_RS04315 (BVL65_04315) | - | 975171..975584 (+) | 414 | WP_016815980.1 | hypothetical protein | - |
| BVL65_RS04320 (BVL65_04320) | - | 975670..978237 (+) | 2568 | WP_076002851.1 | phage tail tape measure protein | - |
| BVL65_RS04325 (BVL65_04325) | - | 978249..978902 (+) | 654 | WP_196768814.1 | hypothetical protein | - |
| BVL65_RS04330 (BVL65_04330) | - | 978915..981722 (+) | 2808 | WP_076002853.1 | phage tail spike protein | - |
| BVL65_RS04335 (BVL65_04335) | - | 981732..981962 (+) | 231 | WP_231130935.1 | hypothetical protein | - |
| BVL65_RS04340 (BVL65_04340) | - | 981943..982296 (+) | 354 | WP_076002855.1 | toxin | - |
| BVL65_RS04345 (BVL65_04345) | - | 982472..982891 (+) | 420 | WP_004118368.1 | phage holin family protein | - |
| BVL65_RS04350 (BVL65_04350) | - | 982884..983804 (+) | 921 | WP_076002856.1 | GH25 family lysozyme | - |
| BVL65_RS04355 (BVL65_04355) | - | 983954..984361 (+) | 408 | WP_076002857.1 | helix-turn-helix domain-containing protein | - |
| BVL65_RS04360 (BVL65_04360) | - | 984348..984560 (+) | 213 | WP_076002858.1 | SHOCT domain-containing protein | - |
| BVL65_RS04365 (BVL65_04365) | - | 984621..986216 (+) | 1596 | WP_076002859.1 | recombinase family protein | - |
| BVL65_RS04370 (BVL65_04370) | - | 986186..986656 (+) | 471 | WP_076002860.1 | DNA recombinase | - |
| BVL65_RS04375 (BVL65_04375) | - | 986598..988175 (+) | 1578 | WP_076002861.1 | recombinase family protein | - |
| BVL65_RS04380 (BVL65_04380) | - | 988681..990522 (+) | 1842 | WP_119504415.1 | hypothetical protein | - |
| BVL65_RS04385 (BVL65_04385) | - | 991116..991880 (-) | 765 | WP_076002862.1 | ABC transporter permease | - |
| BVL65_RS04390 (BVL65_04390) | - | 991894..992619 (-) | 726 | WP_012913764.1 | ABC transporter permease | - |
| BVL65_RS04395 (BVL65_04395) | - | 992616..993380 (-) | 765 | WP_012913763.1 | ABC transporter ATP-binding protein | - |
| BVL65_RS04400 (BVL65_04400) | scnR | 993520..994221 (+) | 702 | WP_076002863.1 | response regulator transcription factor | Regulator |
Sequence
Protein
Download Length: 233 a.a. Molecular weight: 26421.43 Da Isoelectric Point: 4.7966
>NTDB_id=212902 BVL65_RS04400 WP_076002863.1 993520..994221(+) (scnR) [Gardnerella swidsinskii strain GV37]
MNQDDYLLNKHILLVDDEQELLDMVVSILSEYGFHNITTAKSMKDAVEATQTLRPELAILDVMLPDGNGFELMEKIKQYS
DCPVLFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAQVIKNNEHIPLT
AKEHDLLSALYRNAGRIVTIDALCEAAWGDNPFGYENSLMAHIRRIREKIELNPSQPVSLITVKGLGYKLIVE
MNQDDYLLNKHILLVDDEQELLDMVVSILSEYGFHNITTAKSMKDAVEATQTLRPELAILDVMLPDGNGFELMEKIKQYS
DCPVLFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAQVIKNNEHIPLT
AKEHDLLSALYRNAGRIVTIDALCEAAWGDNPFGYENSLMAHIRRIREKIELNPSQPVSLITVKGLGYKLIVE
Nucleotide
Download Length: 702 bp
>NTDB_id=212902 BVL65_RS04400 WP_076002863.1 993520..994221(+) (scnR) [Gardnerella swidsinskii strain GV37]
ATGAATCAGGATGATTATTTGTTGAACAAGCATATTCTGCTTGTTGATGATGAGCAGGAACTTTTAGATATGGTTGTATC
CATATTAAGCGAATATGGTTTTCATAATATAACTACTGCAAAAAGCATGAAAGATGCTGTAGAAGCAACACAAACATTAC
GTCCAGAATTAGCAATACTTGATGTTATGCTCCCTGACGGTAATGGATTTGAGTTAATGGAGAAGATAAAACAATATAGT
GATTGTCCTGTTTTGTTTCTTACTGCTTGCGGTGAGGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGATGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAGCTAACTTTTCGCATTATGGCAATTTTAAGACGAAGCTATAAGAGTGAAAATC
CCATTGTTAAACTGAAAAATAGTCAGATTGATTTTTCTTCTGCCCAAGTAATAAAAAATAACGAACATATTCCACTCACA
GCCAAAGAACACGATTTACTTTCTGCTTTATATAGAAATGCGGGACGTATCGTAACAATTGACGCGTTATGTGAAGCTGC
ATGGGGTGATAATCCTTTTGGATATGAAAATTCTTTAATGGCGCATATACGTCGTATCAGAGAAAAAATAGAACTCAATC
CATCGCAGCCTGTTTCTTTAATAACAGTTAAAGGCTTAGGATATAAGCTGATTGTGGAGTAA
ATGAATCAGGATGATTATTTGTTGAACAAGCATATTCTGCTTGTTGATGATGAGCAGGAACTTTTAGATATGGTTGTATC
CATATTAAGCGAATATGGTTTTCATAATATAACTACTGCAAAAAGCATGAAAGATGCTGTAGAAGCAACACAAACATTAC
GTCCAGAATTAGCAATACTTGATGTTATGCTCCCTGACGGTAATGGATTTGAGTTAATGGAGAAGATAAAACAATATAGT
GATTGTCCTGTTTTGTTTCTTACTGCTTGCGGTGAGGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGATGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAGCTAACTTTTCGCATTATGGCAATTTTAAGACGAAGCTATAAGAGTGAAAATC
CCATTGTTAAACTGAAAAATAGTCAGATTGATTTTTCTTCTGCCCAAGTAATAAAAAATAACGAACATATTCCACTCACA
GCCAAAGAACACGATTTACTTTCTGCTTTATATAGAAATGCGGGACGTATCGTAACAATTGACGCGTTATGTGAAGCTGC
ATGGGGTGATAATCCTTTTGGATATGAAAATTCTTTAATGGCGCATATACGTCGTATCAGAGAAAAAATAGAACTCAATC
CATCGCAGCCTGTTTCTTTAATAACAGTTAAAGGCTTAGGATATAAGCTGATTGTGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| scnR | Streptococcus mutans UA159 |
52.466 |
95.708 |
0.502 |