Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   NP7_RS08155 Genome accession   NZ_CP024443
Coordinates   1832057..1832734 (+) Length   225 a.a.
NCBI ID   WP_100270433.1    Uniprot ID   -
Organism   Moraxella osloensis strain NP7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1827057..1837734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP7_RS08130 (NP7_08125) - 1828208..1828465 (-) 258 WP_036594190.1 BolA/IbaG family iron-sulfur metabolism protein -
  NP7_RS08135 (NP7_08130) - 1828558..1828962 (-) 405 WP_100270429.1 YraN family protein -
  NP7_RS08140 (NP7_08135) - 1828970..1829527 (-) 558 WP_145958790.1 hypothetical protein -
  NP7_RS08145 (NP7_08140) rsmI 1829596..1830441 (+) 846 WP_100270431.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NP7_RS08150 (NP7_08145) coaBC 1830647..1831969 (-) 1323 WP_100270432.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  NP7_RS08155 (NP7_08150) radC 1832057..1832734 (+) 678 WP_100270433.1 RadC family protein Machinery gene
  NP7_RS08160 (NP7_08155) rplQ 1832898..1833257 (-) 360 WP_036593417.1 50S ribosomal protein L17 -
  NP7_RS08165 (NP7_08160) - 1833278..1834285 (-) 1008 WP_007115569.1 DNA-directed RNA polymerase subunit alpha -
  NP7_RS08170 (NP7_08165) rpsD 1834315..1834956 (-) 642 WP_100270434.1 30S ribosomal protein S4 -
  NP7_RS08175 (NP7_08170) rpsK 1834967..1835356 (-) 390 WP_007115567.1 30S ribosomal protein S11 -
  NP7_RS08180 (NP7_08175) rpsM 1835377..1835733 (-) 357 WP_007115566.1 30S ribosomal protein S13 -
  NP7_RS08185 (NP7_08180) rpmJ 1835889..1836005 (-) 117 WP_062331858.1 50S ribosomal protein L36 -
  NP7_RS08190 (NP7_08185) secY 1836025..1837362 (-) 1338 WP_100270435.1 preprotein translocase subunit SecY -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24630.52 Da        Isoelectric Point: 7.3004

>NTDB_id=212899 NP7_RS08155 WP_100270433.1 1832057..1832734(+) (radC) [Moraxella osloensis strain NP7]
MAIKDWHQDERPREKLLQKGAESLSDSEILAIFLRTGTKDQSAIELARGLIERFGSLAQLLSAPSEAVMACHGIGMAKYA
QILASLEMGKRYLASQVKQAPTLNASQLVKDYLTTQLRPLNREVFAVLFLTNQLTLIQYEVLFTGGISSCSVCVREVLRC
ALKYGASQLIIAHNHPSTSATASQADLEITRSLARACQLVDMTLIDHIIVGQDGTLSLQETGKMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=212899 NP7_RS08155 WP_100270433.1 1832057..1832734(+) (radC) [Moraxella osloensis strain NP7]
ATGGCAATCAAAGACTGGCACCAAGACGAGCGCCCCAGAGAGAAGCTACTGCAAAAAGGCGCTGAGAGTCTATCAGATAG
TGAGATTTTGGCAATATTCTTACGCACAGGTACCAAAGACCAATCCGCCATCGAACTGGCTCGTGGCTTGATTGAAAGAT
TTGGCAGTCTCGCTCAGTTATTATCCGCGCCTAGTGAAGCAGTCATGGCGTGTCATGGTATCGGCATGGCAAAATACGCG
CAGATTTTGGCAAGCCTTGAGATGGGCAAACGCTACCTTGCCAGCCAAGTCAAACAAGCCCCTACCCTTAACGCTAGTCA
GTTGGTCAAAGACTATCTGACTACGCAGCTGCGACCGCTCAATCGCGAGGTGTTTGCAGTACTGTTTTTGACCAATCAAC
TTACCTTAATCCAGTATGAGGTATTATTCACAGGCGGTATTTCATCGTGCTCGGTGTGTGTGCGGGAAGTGTTGCGCTGT
GCGTTAAAATATGGGGCAAGTCAGCTTATTATCGCCCACAATCACCCAAGTACCTCTGCCACAGCGTCACAGGCAGATCT
AGAGATTACCCGCAGTTTGGCAAGAGCGTGTCAGCTTGTCGATATGACTTTGATTGACCATATTATCGTGGGTCAAGATG
GCACGCTTTCTTTACAAGAAACAGGCAAGATGCCTTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(105-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.333

93.333

0.404
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.326

100

0.387

Multiple sequence alignment