Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BVL33_RS03305 Genome accession   NZ_CP019041
Coordinates   680824..681483 (-) Length   219 a.a.
NCBI ID   WP_042892093.1    Uniprot ID   -
Organism   Acinetobacter junii strain 65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 675824..686483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVL33_RS03270 (BVL33_03270) - 676481..677155 (+) 675 WP_004909422.1 outer membrane lipid asymmetry maintenance protein MlaD -
  BVL33_RS03275 (BVL33_03275) - 677175..677807 (+) 633 WP_004909421.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  BVL33_RS03280 (BVL33_03280) - 677819..678106 (+) 288 WP_004964385.1 STAS domain-containing protein -
  BVL33_RS03285 (BVL33_03285) - 678161..678688 (-) 528 WP_039047480.1 hypothetical protein -
  BVL33_RS03290 (BVL33_03290) - 678690..679703 (-) 1014 WP_004964376.1 magnesium and cobalt transport protein CorA -
  BVL33_RS03295 (BVL33_03295) - 679854..680438 (+) 585 WP_004964372.1 TIGR00730 family Rossman fold protein -
  BVL33_RS03300 (BVL33_03300) - 680448..680834 (+) 387 WP_005403262.1 NUDIX hydrolase -
  BVL33_RS03305 (BVL33_03305) comF 680824..681483 (-) 660 WP_042892093.1 ComF family protein Machinery gene
  BVL33_RS03310 (BVL33_03310) recG 681476..683521 (-) 2046 WP_004964361.1 ATP-dependent DNA helicase RecG -
  BVL33_RS03315 (BVL33_03315) - 683541..684359 (+) 819 WP_004964357.1 NAD-dependent epimerase/dehydratase family protein -
  BVL33_RS03320 (BVL33_03320) - 684484..685449 (+) 966 WP_004964356.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25002.28 Da        Isoelectric Point: 8.8068

>NTDB_id=212806 BVL33_RS03305 WP_042892093.1 680824..681483(-) (comF) [Acinetobacter junii strain 65]
MFKLLSRGAQQVADYFTACHLCDIGVRAHHGVCQSCWQQLPWLKHKIERHQQDILIACHYEYPISQLIQQFKYEQQLHHL
RLLSGLLLELKLPKVHAIVPMPISNDRLMERGFNQSLLIAKELSKVLNIPVWQPVQRLAQHSQKGLSRLERLENIEDQFV
AKTHLQLIYRKVLIIDDVVTTGSSINALSLVLKQLGCQHIYSACLAAGGVKQANHDVIA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=212806 BVL33_RS03305 WP_042892093.1 680824..681483(-) (comF) [Acinetobacter junii strain 65]
ATGTTTAAATTATTGAGCCGAGGAGCACAACAAGTTGCTGATTATTTCACAGCATGTCACTTATGCGATATTGGTGTCAG
AGCACACCATGGTGTTTGTCAAAGTTGCTGGCAACAATTACCATGGTTAAAACATAAAATCGAACGACATCAGCAAGATA
TACTTATTGCCTGTCATTATGAATATCCGATCAGCCAACTCATTCAACAATTTAAATACGAGCAACAGTTACATCATCTT
CGATTACTTAGCGGACTATTACTGGAACTTAAGCTGCCAAAAGTACATGCCATCGTACCAATGCCTATTTCAAATGATCG
ACTGATGGAAAGAGGTTTCAATCAATCACTTTTAATCGCTAAGGAACTGAGCAAAGTATTGAATATTCCAGTATGGCAGC
CCGTGCAACGACTAGCCCAACATTCTCAAAAAGGTTTAAGCCGCTTAGAGCGACTGGAAAATATAGAAGATCAATTTGTC
GCTAAAACACATCTTCAATTGATTTATAGAAAAGTGCTGATTATTGATGATGTCGTGACCACAGGCAGCTCTATCAATGC
CCTCAGTCTAGTATTAAAACAGTTGGGGTGCCAACATATATACTCAGCCTGTTTAGCCGCTGGTGGTGTTAAACAGGCAA
ATCATGATGTTATTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

63.158

95.434

0.603
  comF Acinetobacter baumannii D1279779

62.679

95.434

0.598

Multiple sequence alignment