Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BVH55_RS15870 Genome accession   NZ_CP019040
Coordinates   3133792..3134436 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain GH1-13     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3128792..3139436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH55_RS15835 (BVH55_15870) - 3129977..3130408 (+) 432 WP_077722765.1 Na(+)/H(+) antiporter subunit B -
  BVH55_RS15840 (BVH55_15875) - 3130408..3130749 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  BVH55_RS15845 (BVH55_15880) - 3130742..3132223 (+) 1482 WP_077722766.1 Na+/H+ antiporter subunit D -
  BVH55_RS15850 (BVH55_15885) - 3132229..3132705 (+) 477 WP_077722767.1 Na+/H+ antiporter subunit E -
  BVH55_RS15855 (BVH55_15890) - 3132705..3132989 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  BVH55_RS15860 (BVH55_15895) mnhG 3132973..3133347 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  BVH55_RS15865 (BVH55_15900) - 3133387..3133770 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  BVH55_RS15870 (BVH55_15905) comA 3133792..3134436 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  BVH55_RS15875 (BVH55_15910) comP 3134517..3136808 (-) 2292 WP_077722768.1 histidine kinase Regulator
  BVH55_RS15880 (BVH55_15915) comX 3136820..3136984 (-) 165 WP_007613432.1 competence pheromone ComX -
  BVH55_RS15885 (BVH55_15920) - 3136984..3137895 (-) 912 WP_031378407.1 polyprenyl synthetase family protein -
  BVH55_RS15890 (BVH55_15925) degQ 3138047..3138187 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BVH55_RS15900 (BVH55_15935) - 3138652..3138993 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=212774 BVH55_RS15870 WP_003152052.1 3133792..3134436(-) (comA) [Bacillus velezensis strain GH1-13]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=212774 BVH55_RS15870 WP_003152052.1 3133792..3134436(-) (comA) [Bacillus velezensis strain GH1-13]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGTAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGTACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment