Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   CRH16_RS07355 Genome accession   NZ_CP024412
Coordinates   1410560..1412389 (+) Length   609 a.a.
NCBI ID   WP_021114736.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SH0104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1405560..1417389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH16_RS07330 - 1406734..1407492 (+) 759 WP_112063038.1 tetratricopeptide repeat protein -
  CRH16_RS07335 - 1407498..1408280 (+) 783 WP_016528231.1 hypothetical protein -
  CRH16_RS07340 - 1408582..1409346 (+) 765 WP_112063039.1 hypothetical protein -
  CRH16_RS07345 dinR/lexA 1409540..1410169 (+) 630 WP_005712712.1 transcriptional repressor LexA Regulator
  CRH16_RS07350 cyaY 1410252..1410560 (+) 309 WP_020996917.1 iron donor protein CyaY -
  CRH16_RS07355 recQ 1410560..1412389 (+) 1830 WP_021114736.1 ATP-dependent DNA helicase RecQ Machinery gene
  CRH16_RS07360 ligA 1412447..1414474 (-) 2028 WP_112063040.1 NAD-dependent DNA ligase LigA -
  CRH16_RS07365 zipA 1414538..1415356 (-) 819 WP_112063041.1 cell division protein ZipA -
  CRH16_RS07370 cysZ 1415465..1416220 (+) 756 WP_075592525.1 sulfate transporter CysZ -
  CRH16_RS07380 frdD 1416539..1416883 (-) 345 WP_010785937.1 fumarate reductase subunit FrdD -
  CRH16_RS07385 frdC 1416897..1417292 (-) 396 WP_016528237.1 fumarate reductase subunit FrdC -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69026.22 Da        Isoelectric Point: 7.5134

>NTDB_id=212752 CRH16_RS07355 WP_021114736.1 1410560..1412389(+) (recQ) [Glaesserella parasuis strain SH0104]
MSVTPLAKAETVLHNVFGYQSFRQGQSEVIEAILSGKDCLVIMTTGGGKSLCYQVPALCFEGITLVISPLISLMKDQVDQ
LLINGVEAGYINSTQTIEEQQAVEQKAISGQLKLLYLSPEKVMTSNFFQFISLCKISLIAVDEAHCVSQWGHDFRPEYTL
LGGLRKTFPNIPLVALTATADPTTRFDIIHHLKLEDPHTYLGSFDRPNIRYTVQEKFKPVDQLIKFISSQQGKSGIVYCN
SRKKVEELTEKLSSHRFSVMGYHAGMTVQQRETVQNAFQRDNIQIVVATVAFGMGINKSNVRFVVHFDLPRSIEAYYQET
GRAGRDDLPAEAVLFYDPADYGWLHKVLLEKPESEQRQIEQHKLQAIGAFAESQTCRRLVLLNYFGETRQVACQNCDICL
DPPKKYDGLVDAQKVMSVIYRTGQRFGLHHIIAVLRGLNQQKIREYQHDTLSVYGIGKDKSQEYWISVTRQLIHLGFIRQ
NIVNHSALQLTEQARPILRGETALALASPRLSFSATAYVQKQQASKRYDKDLFARLRFLRKQIADKENIPPYVVFNDATL
QEMAEFMPTTADEMLSINGVGERKLERFGEAFLGLIREHLYHIESIVCD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=212752 CRH16_RS07355 WP_021114736.1 1410560..1412389(+) (recQ) [Glaesserella parasuis strain SH0104]
ATGTCAGTTACACCGCTTGCCAAAGCTGAAACGGTTTTACATAACGTTTTCGGCTACCAATCTTTCCGACAAGGTCAATC
AGAAGTGATTGAAGCGATCTTGTCGGGTAAAGATTGCTTGGTGATTATGACAACAGGGGGCGGAAAATCCCTTTGTTATC
AAGTGCCAGCCCTCTGTTTTGAAGGCATAACTCTCGTGATCTCACCTTTGATTTCGCTAATGAAAGATCAGGTAGATCAA
CTGCTTATCAATGGTGTTGAAGCTGGCTATATCAATTCCACCCAAACGATTGAAGAACAGCAAGCGGTTGAACAAAAAGC
GATTTCAGGACAACTCAAGCTACTTTACCTTTCACCCGAAAAGGTAATGACATCCAATTTTTTCCAATTTATCTCATTGT
GCAAAATTAGCCTGATTGCGGTCGATGAAGCACATTGCGTATCTCAATGGGGACACGATTTTCGCCCTGAATACACCTTG
TTAGGCGGTTTGCGAAAAACTTTCCCAAACATACCGCTTGTTGCGCTGACTGCAACAGCAGATCCGACAACCCGTTTTGA
TATTATTCATCATCTTAAGCTAGAAGATCCCCACACTTATTTAGGAAGTTTTGATCGTCCTAACATTCGCTATACGGTGC
AAGAAAAATTTAAACCTGTGGATCAACTGATCAAATTTATCAGCAGTCAGCAAGGGAAAAGTGGTATTGTTTATTGTAAT
AGCCGTAAAAAAGTTGAAGAACTCACGGAAAAACTTTCTTCTCACCGTTTTTCTGTAATGGGCTATCACGCAGGAATGAC
GGTACAACAACGGGAAACCGTTCAAAATGCGTTTCAACGAGATAATATTCAAATTGTCGTTGCTACTGTTGCCTTTGGAA
TGGGAATCAACAAATCCAATGTGCGTTTTGTTGTGCATTTTGATCTGCCAAGAAGCATTGAAGCCTATTATCAAGAAACA
GGGCGAGCAGGGCGAGATGATCTTCCTGCGGAAGCGGTGTTATTTTACGATCCTGCGGATTATGGCTGGTTACACAAGGT
ATTATTAGAAAAACCAGAAAGTGAACAACGTCAAATTGAGCAACATAAATTGCAAGCCATTGGGGCTTTTGCCGAATCAC
AAACTTGCCGTCGCCTTGTGTTACTCAACTATTTTGGTGAAACACGCCAAGTTGCTTGTCAAAATTGTGACATTTGCCTT
GATCCACCGAAAAAGTATGATGGTTTAGTTGATGCCCAAAAAGTGATGTCCGTTATTTACCGCACAGGACAACGCTTCGG
CTTACATCATATTATTGCAGTTCTTCGGGGCTTAAATCAGCAAAAAATCCGTGAATATCAACACGACACTCTATCTGTCT
ATGGGATTGGCAAGGATAAATCTCAAGAATATTGGATTAGCGTAACTCGCCAGCTCATTCATCTTGGCTTTATTCGCCAA
AACATTGTTAATCATTCTGCCCTACAACTCACAGAACAAGCTCGCCCCATTTTACGCGGTGAAACAGCCTTGGCACTGGC
TTCCCCACGTTTAAGTTTTTCGGCAACAGCTTATGTGCAGAAACAGCAAGCTAGCAAGCGGTATGATAAAGATCTTTTTG
CCCGTTTACGCTTTTTACGCAAACAGATTGCCGATAAGGAAAATATTCCCCCTTACGTCGTTTTCAATGACGCTACCCTG
CAAGAAATGGCAGAATTTATGCCAACGACGGCAGATGAAATGCTTTCCATTAATGGGGTAGGTGAGAGAAAACTGGAGAG
GTTTGGAGAGGCGTTTTTAGGGCTTATTAGAGAGCATTTATATCATATAGAAAGTATTGTTTGTGATTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(25-181)

RecQ zinc-binding (RecQ_Zn_bind)

(349-400)

HRDC domain (HRDC)

(530-596)

Helicase conserved C-terminal domain (Helicase_C)

(221-325)

RQC domain (RQC)

(402-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.527

97.209

0.384

Multiple sequence alignment