Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   CRH16_RS07345 Genome accession   NZ_CP024412
Coordinates   1409540..1410169 (+) Length   209 a.a.
NCBI ID   WP_005712712.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SH0104     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1404540..1415169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH16_RS07330 - 1406734..1407492 (+) 759 WP_112063038.1 tetratricopeptide repeat protein -
  CRH16_RS07335 - 1407498..1408280 (+) 783 WP_016528231.1 hypothetical protein -
  CRH16_RS07340 - 1408582..1409346 (+) 765 WP_112063039.1 hypothetical protein -
  CRH16_RS07345 dinR/lexA 1409540..1410169 (+) 630 WP_005712712.1 transcriptional repressor LexA Regulator
  CRH16_RS07350 cyaY 1410252..1410560 (+) 309 WP_020996917.1 iron donor protein CyaY -
  CRH16_RS07355 recQ 1410560..1412389 (+) 1830 WP_021114736.1 ATP-dependent DNA helicase RecQ Machinery gene
  CRH16_RS07360 ligA 1412447..1414474 (-) 2028 WP_112063040.1 NAD-dependent DNA ligase LigA -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23240.65 Da        Isoelectric Point: 5.6315

>NTDB_id=212751 CRH16_RS07345 WP_005712712.1 1409540..1410169(+) (dinR/lexA) [Glaesserella parasuis strain SH0104]
MKRQHLTARQQEIFEFVKNHIESTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVEDEAANDE
EGLPLIGKVAAGTPIEAIEHIEKHYPVNGAMFSPAADYLLKVNGNSMEKIGILDGDLLAVHKTKSVRNGQVVVARVDDEV
TVKRLEKKGDLIYLHPENDELEPIIIDPRQSYIEIEGIAVGVIRSNAWM

Nucleotide


Download         Length: 630 bp        

>NTDB_id=212751 CRH16_RS07345 WP_005712712.1 1409540..1410169(+) (dinR/lexA) [Glaesserella parasuis strain SH0104]
ATGAAACGTCAGCACCTAACGGCTCGTCAGCAAGAAATCTTTGAATTTGTAAAAAATCATATTGAAAGTACGGGTATGCC
ACCAACTCGTGTAGAAATTGCTCGTGAAATTGGGTTTAAATCACCAAATGCCGCAGAAGAACACCTTAAAGCTCTTGCTC
GTAAAGGCTATATTGAAATGCTTTCAGGGACTTCGCGTGGGATCCGTATTTTAGTGGAAGATGAAGCAGCAAACGATGAA
GAAGGTTTGCCTTTAATTGGTAAAGTTGCAGCAGGTACGCCGATTGAAGCCATTGAACACATTGAAAAACATTATCCTGT
GAATGGGGCAATGTTCTCGCCAGCTGCCGATTATCTTCTTAAGGTGAATGGGAACTCAATGGAAAAAATTGGTATCTTAG
ATGGTGATTTACTCGCAGTGCATAAAACTAAATCTGTTCGTAATGGGCAAGTCGTTGTCGCCCGTGTTGATGATGAAGTC
ACCGTCAAACGCTTAGAGAAAAAAGGTGACTTAATCTATTTACACCCAGAAAATGATGAATTAGAGCCGATTATCATCGA
TCCTCGTCAATCTTATATTGAAATCGAAGGCATTGCTGTCGGCGTTATTCGTAGCAACGCTTGGATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-67)

Peptidase S24-like (Peptidase_S24)

(84-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.725

97.608

0.378

Multiple sequence alignment